1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...aattttctttggctttaaattgattgtgaagtagacgtagatgctgttattaagtaacatatactgagccttttgcaaatgtttactttaattgtcctagGTACTTGATGAAGCTGATCGGATGCTTGACATGGGTTTTGAACAAATAGTTCGCTCTATACTGGGTCAAACGTGTTCTG
species | Glycine max |
transcript | GLYMA01G01390.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGGATCTGATTGAAATGGGTATCTGTTGCCTAAAAGAAGTATCTTTTGTG GTACTTGATGAAGCTGATCGGATGCTAGACATGGGTTTTGAACAAATAGTTEST: gi|6915515|gb|AW397045.1|AW397045
genomic: AGGATCTGATTGAAATGGGTATCTGTTGCCTAAAAGAAGTATCTTTTGTGgtaagctgta ... attgtcctagGTACTTGATGAAGCTGATCGGATGCTTGACATGGGTTTTGAACAAATAGTT
EST: TTGAAATGGGTATCTGTTGCCTAAAAGAAGTATCTTTTGTG GTACTTGATGAAGCTGATCGGATGCTTGACATGGGTTTTGAACAAATAGTTEST: gi|19269661|gb|BM885917.1|BM885917
genomic: TTGAAATGGGTATCTGTTGCCTAAAAGAAGTATCTTTTGTGgtaagctgta ... attgtcctagGTACTTGATGAAGCTGATCGGATGCTTGACATGGGTTTTGAACAAATAGTT
EST: AGGATCTGATTGAAATGGGTATCTGTTGCCTAAAAGAAGTATCTTTTGTG GTACTTGATGAAGCTGATCGGATGCTTGACATGGGTTTTGAACAAATAGTT
genomic: AGGATCTGATTGAAATGGGTATCTGTTGCCTAAAAGAAGTATCTTTTGTGgtaagctgta ... attgtcctagGTACTTGATGAAGCTGATCGGATGCTTGACATGGGTTTTGAACAAATAGTT
gttattaagtaacatatactgagccttttgcaaatgtttactttaattgtcctagGTACTTGATGAAGCTGATCGGATGCTTGACATGGGTTTTGAACAAATAGTTCGCTCTATACTGGGTCAAACGTGTTCTG
ttgtcct CT-rich tract
aaatgtttactttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattttctttggctttaaattgattgtgaagtagacgtagatgctgttattaagtaacatatactgagccttttgcaaatgtttactttaattgtcctagGTACTTGATGAAGCTGATCGGATGCTTGACATGGGTTTTGAACAAATAGTTCGCTCTATACTGGGTCAAACGTGTTCTG
- - - ctttggc
- - - - - - - - - - -gattgtg
- - - - - - - - - - - - - - - - - - - - -tgctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -catatac