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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgttccctcaaccttttatttctccctttgaggttttgatgcaagaaaaactgtctaggaattgatatgtatcatatctcatagattcatttgtacttttgtagCCAGTCATGGTCTTTTGCAGCAGGGTAATCCAGAATATGATGCCAAAAGGCAGCAGTTATATGAATATTACCATCCATTAGAGTTTTCGCCGACTATTGG

Basic information

species Glycine max
transcript GLYMA20G33690.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G33690.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv13s0073g00650.t01 (Vitis vinifera), 3'ss of exon 3
gtatgttgttccctcaaccttttatttctccctttgaggttttgatgcaagaaaaactgtctaggaattgatatgtatcatatctcatagattcatttgt--acttttgtagCCAGTCATGGTCTTTTGCAGCAGGGTAATCCAGAATATGATGCCAAAAGGCAGCAGTTATATGAATATTACCATCCATTAGAGTTTTCGCCGACTATTGG
||| || |||   |     |  ||||       ||    ||   ||  | |     |  || ||       | ||     |  ||   || ||||| |    || | ||||| ||||||||| |||||||| ||||| ||||| |||||||||| ||| |||| | |  ||||||| ||||| |||||||||||  | || || | ||||  
gtaagt-gtttggtgtttatcctattatcattattatcattagaattaatggttttccttcaagtttgccctttggggt-tggctttcagtttcatctaacaacatgtgtagGCAGTCATGGCCTTTTGCAACAGGGGAATCCTGAATATGATGTCAAGAGGCGGGAACTATATGACTATTATCATCCATTAGAAATCTCCCCAAGTATTCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6455662|gb|AW186345.1|AW186345
EST:     TTTTGATGCCACGTTAACAAAGTTTTGGGTTAATGGAACTCGTGGCCAAA                         CCAGTCATGGTCTTTTGCAGCAGGGTAATCCAGAATATGATGCCAAAAGGC
genomic: TTTTGATGCCACGTTAACAAAGTTTTGGGTTAATGGAACTCGTGGCCAAAgtatgttgtt ... acttttgtagCCAGTCATGGTCTTTTGCAGCAGGGTAATCCAGAATATGATGCCAAAAGGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgtctaggaattgatatgtatcatatctcatagattcatttgtacttttgtagCCAGTCATGGTCTTTTGCAGCAGGGTAATCCAGAATATGATGCCAAAAGGCAGCAGTTATATGAATATTACCATCCATTAGAGTTTTCGCCGACTATTGG
          aattgat  putative branch site (score: 4)
                                            tactttt  putative PPT
          aattgatat  TA-rich tract