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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttatagtcttcactatattttttttttttgctacacaatttagtgcatttgtctctaataattgttggtgagatttggcagCTCCAGTACTCTCACAAGTATCAGGATCCTTTCAATCTTCATCAGCTTTGCTTGAACCTGGATACATATTAAAGCATGACTCTTCAGCAATGCCTAAAAC

Basic information

species Glycine max
transcript GLYMA20G30250.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22524646|gb|BU083457.1|BU083457
EST:     ACCAAAAAGAAAAGCTGCTCATCCATATCCTCAGAAAGCTTCAAAAACTG                         CTCCAGTACTCTCACAAGTATCAGGATCCTTTCAATCTTCATCAGCTTTGC
genomic: ACCAAAAAGAAAAGCTGCTCATCCATATCCTCAGAAAGCTTCAAAAACTGgttatagtct ... gatttggcagCTCCAGTACTCTCACAAGTATCAGGATCCTTTCAATCTTCATCAGCTTTGC
EST: gi|22524561|gb|BU083372.1|BU083372
EST:     ACCAAAAAGAAAAGCTGCTCATCCATATCCTCAGAAAGCTTCAAAAACTG                         CTCCAGTACTCTCACAAGTATCAGGATCCTTTCAATCTTCATCAGCTTTGC
genomic: ACCAAAAAGAAAAGCTGCTCATCCATATCCTCAGAAAGCTTCAAAAACTGgttatagtct ... gatttggcagCTCCAGTACTCTCACAAGTATCAGGATCCTTTCAATCTTCATCAGCTTTGC
EST: gi|10231304|gb|BE800192.1|BE800192
EST:     ACCAAAAAGAAAAGCTGCTCATCCATATCCTCAGAAAGCTTCAAAAACTG                         CTCCAGTACTCTCACAAGTATCAGGATCCTTTCAATCTTCATCAGCTTTGC
genomic: ACCAAAAAGAAAAGCTGCTCATCCATATCCTCAGAAAGCTTCAAAAACTGgttatagtct ... gatttggcagCTCCAGTACTCTCACAAGTATCAGGATCCTTTCAATCTTCATCAGCTTTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgctacacaatttagtgcatttgtctctaataattgttggtgagatttggcagCTCCAGTACTCTCACAAGTATCAGGATCCTTTCAATCTTCATCAGCTTTGCTTGAACCTGGATACATATTAAAGCATGACTCTTCAGCAATGCCTAAAAC
                          ctctaat  putative branch site (score: 3)
                             taataattgtt  TA-rich tract