Sequence
atgc intronic sequence ATGC exonic sequencegtaagcctgatctcatgattggaactctcaagatataatttcatttgcatcactggagatactcattcaaacatatttcattctgcagCCCTTTCATTAAGTCCTTCATTCAAGGTTTTCTGCCCGGTATTGTGTTGAAGCTATTCCTCATCTTCTTGCCAACAATATTGATGATCATGTCTAAATTT
Basic information
species | Glycine max |
transcript | GLYMA20G16230.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G16230.2 (Glycine max), 3'ss of exon 3
lower sequence: AT4G04340.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaagcctgatctcatgattggaactctcaagatataatttcatttgcatcactggagatactcattcaaac---atatttcattctgcagCCCTTTCATTAAGTCCTTCATTCAAGGTTTTCTGCCCGGTATTGTGTTGAAGCTATTCCTCATCTTCTTGCCAACAATATTGATGATCATGTCTAAATTT
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gtgagttctcttgttctctaaaattgttccattcttcatgacattaaatatgaggaacattttgactaacagtggacctttttgttcacagAGATTTCATAAAATCGCTGATACAAGGTTTGCTAGCCGGTATTGCGTTGAAGCTTTTCCTCATCTTTCTGCCAGCCATACTGATGACCATGTCCAAATTT
upper sequence: GLYMA20G16230.2 (Glycine max), 3'ss of exon 3
lower sequence: AT1G62320.1 (Arabidopsis thaliana), 3'ss of exon 7
gtaagcctgatctcatgattggaactctcaagatataatttcatttgcatcactggagatactcattcaaacatatttcattctgcagCCCTTTCATTAAGTCCTTCATTCAAGGTTTTCTGCCCGGTATTGTGTTGAAGCTATTCCTCATCTTCTTGCCAACAATATTGATGATCATGTCTAAATTT
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gtaggtacattctca-------agttttttacttaccatttcaagaataaggcttaattcaattcttgatcaatcttgcgtg-tgcagCAAGTTAATGAAATCATTGATCCAAGGTTTTCTTCCCGGTATTGTCTTGAAGCTCTTTTTGATATTCCTGCCAACAATATTGATGATCATGTCGAAATTCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|17964347|gb|BM271083.1|BM271083EST: CTTGATGGAATCCAGAAAGCAGCACCATGGCTGAAGCCACTTGTTGACAT CCCTTTCATTAAGTCCTTCATTCAAGGTTTTCTGCCCGGTATTGTGTTGAA
genomic: CTTGATGGAATCCAGAAAGCAGCACCATGGCTGAAGCCACTTGTTGACATgtaagcctga ... cattctgcagCCCTTTCATTAAGTCCTTCATTCAAGGTTTTCTGCCCGGTATTGTGTTGAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tataatttcatttgcatcactggagatactcattcaaacatatttcattctgcagCCCTTTCATTAAGTCCTTCATTCAAGGTTTTCTGCCCGGTATTGTGTTGAAGCTATTCCTCATCTTCTTGCCAACAATATTGATGATCATGTCTAAATTT
tttcattct CT-rich tract
attcaaacatattt TA-rich tract