1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtcatatttttgtagattttggtcgaagtgcttttaatattatgggtgttgctaatgatgactgtgtatttaacagGTAGCAAGGTGCACAAAGATCATAAATCCAAATTCAGAAGATGCCAAATATGTTATCAATGTGAAGCAGATTGCAAAG
species | Glycine max |
transcript | GLYMA19G45140.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAG GTAGCAAGGTGCACAAAGATCATAAATCCAAATTCAGAAGATGCCAAATATEST: gi|207714809|gb|GD695027.1|GD695027
genomic: GGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAGgtcatatttt ... tatttaacagGTAGCAAGGTGCACAAAGATCATAAATCCAAATTCAGAAGATGCCAAATAT
EST: GGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAG GTAGCAAGGTGCACAAAGATCATAAATCCAAATTCAGAAGATGCCAAATATEST: gi|254338828|gb|GR847545.1|GR847545
genomic: GGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAGgtcatatttt ... tatttaacagGTAGCAAGGTGCACAAAGATCATAAATCCAAATTCAGAAGATGCCAAATAT
EST: GGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAG GTAGCAAGGTGCACAAAGATCATAAATCCAAATTCAGAAGATGCCAAATATEST: gi|151410157|gb|EV279965.1|EV279965
genomic: GGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAGgtcatatttt ... tatttaacagGTAGCAAGGTGCACAAAGATCATAAATCCAAATTCAGAAGATGCCAAATAT
EST: GGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAG GTAGCAAGGTGCACAAAGATCATAAATCCAAATTCAGAAGATGCCAAATATEST: gi|151406841|gb|EV276656.1|EV276656
genomic: GGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAGgtcatatttt ... tatttaacagGTAGCAAGGTGCACAAAGATCATAAATCCAAATTCAGAAGATGCCAAATAT
EST: GGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAG GTAGCAAGGTGCACAAAGATCATAAATCCAAATTCAGAAGATGCCAAATATEST: gi|254320308|gb|GR831116.1|GR831116
genomic: GGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAGgtcatatttt ... tatttaacagGTAGCAAGGTGCACAAAGATCATAAATCCAAATTCAGAAGATGCCAAATAT
EST: GGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAG GTAGCAAGGTGCACAAAGATCATAAATCCAAATTCAGAAGATGCCAAATATEST: gi|208225841|gb|GE021038.1|GE021038
genomic: GGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAGgtcatatttt ... tatttaacagGTAGCAAGGTGCACAAAGATCATAAATCCAAATTCAGAAGATGCCAAATAT
EST: CAAATGATGCAGGAGGAGCAGCCTCTTCAG GTAGCAAGGTGCACAAAGATCATAAATCCAAATTCAGAAGATGCCAAATAT
genomic: CAAATGATGCAGGAGGAGCAGCCTCTTCAGgtcatatttt ... tatttaacagGTAGCAAGGTGCACAAAGATCATAAATCCAAATTCAGAAGATGCCAAATAT
gtcgaagtgcttttaatattatgggtgttgctaatgatgactgtgtatttaacagGTAGCAAGGTGCACAAAGATCATAAATCCAAATTCAGAAGATGCCAAATATGTTATCAATGTGAAGCAGATTGCAAAG
tgctaat putative branch site (score: 2)
tgcttttaatattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcatatttttgtagattttggtcgaagtgcttttaatattatgggtgttgctaatgatgactgtgtatttaacagGTAGCAAGGTGCACAAAGATCATAAATCCAAATTCAGAAGATGCCAAATATGTTATCAATGTGAAGCAGATTGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG