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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttaattgtaaatgtaaactacaaaacattggactaaccttgtaaggcatgatgtgaatgtatgacttttcatctttgttactattataaccggagcatttactctgtgtagtatttttaatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGTCTCTCGGCAGAGGGATTTGATGTTGTTTATGACATAAATG

Basic information

species Glycine max
transcript GLYMA19G41540.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G41540.2 (Glycine max), 3'ss of exon 3
lower sequence: AT1G09340.1 (Arabidopsis thaliana), 3'ss of exon 3
gtatgttaattgtaaatgtaaactacaaaacattggactaaccttgtaaggcatgatgtgaatg-tatgacttttcatctttgttactattataaccggagcatttactctgtgtagtatttttaatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGTCTCTCGGCAGAGGGATTTGATGTTGTTTATGACATAAATG
||||   |    |   ||||||  || |        ||| |  |  |||   |   |    ||| || ||  ||  ||  ||   | |   ||||    |    ||  |||  |            ||| | ||||  | || |||||||||||||| ||||||| ||||||||| || || ||||| || ||||| || || |||||||||||||| || || |
gtattacatgaatccttgtaaaaaactagtatgcacactcaaat-ataatatacatttcagatgataggaacttggatgattaggattccaataaaataaatgatttttctcggcc----------ttttctagATTCTTCACTTGAAAGGAGACAGAAAGGACTATGACTTTGTGAAGTCAAGTCTTTCAGCAGAAGGCTTCGATGTTGTTTATGATATCAACG

upper sequence: GLYMA19G41540.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv14s0060g00820.t01 (Vitis vinifera), 3'ss of exon 3
gtatgttaattgtaaatgtaaactacaaaacattggactaaccttgtaaggcatgatgtgaat-gtatgacttttcatctttg---ttactattataaccggagcat-------ttactctgtgtagtatttttaatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGTCTCTCGGCAGAGGGATTTGATGTTGTTTATGACATAAATG
    ||  ||| |  |  |   |||||  | |||   || ||    | |  |  | | | | | ||||   || ||   |  |   | || |  ||   |  ||          ||  |   ||   | |||||  |||   || | |||||||||||||||||||| ||||||||||| ||||| ||| |||||||  | || || || ||||||||||| || || |||||||
----gtatattatgtaccttgtctacatga-att---ctcactccttcatccccggtttcattagtattcattctctcttgaggaatgaccagcatgttccaagtgcatgaaagttgtttcttgattttttttttctttggtagGTTTTGCATTTGAAAGGAGACAGAAAGGACTTTGAATTTGTGAAAACCAGTCTTGCAGCTGAAGGCTTTGATGTTGTCTACGATATAAATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209712446|gb|BW671298.1|BW671298
EST:     AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAGgtatgttaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
EST: gi|8670400|gb|BE191507.1|BE191507
EST:     AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAGgtatgttaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
EST: gi|209702885|gb|BW655995.1|BW655995
EST:     AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAGgtatgttaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
EST: gi|27426223|gb|CA937743.1|CA937743
EST:     AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAGgtatgttaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
EST: gi|213595578|gb|DB962434.1|DB962434
EST:     AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAGgtatgttaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
EST: gi|9903043|gb|BE612011.1|BE612011
EST:     AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAGgtatgttaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
EST: gi|120530586|gb|EH258719.1|EH258719
EST:     AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAGgtatgttaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
EST: gi|5753286|gb|AI960573.1|AI960573
EST:     AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTNTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAGgtatgttaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
EST: gi|16348529|gb|BI974124.1|BI974124
EST:     AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAGgtatgttaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
EST: gi|213617672|gb|DB959340.1|DB959340
EST:     AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAGgtatgttaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
EST: gi|7284172|gb|AW596769.1|AW596769
EST:     AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAGgtatgttaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
EST: gi|23064426|gb|BU579199.1|BU579199
EST:     AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAGgtatgttaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
EST: gi|7686625|gb|AW757282.1|AW757282
EST:     AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAGgtatgttaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
EST: gi|120533740|gb|EH261873.1|EH261873
EST:     AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAGgtatgttaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
EST: gi|209707067|gb|BW653204.1|BW653204
EST:     AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAGgtatgttaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
EST: gi|209719660|gb|BW669219.1|BW669219
EST:     AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAGgtatgttaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
EST: gi|15286291|gb|BI470182.1|BI470182
EST:     AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAGgtatgttaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
EST: gi|7925259|gb|AW831285.1|AW831285
EST:     GTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
genomic: GTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAGgtatgttaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
EST: gi|15287371|gb|BI471262.1|BI471262
EST:     AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAGgtatgttaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
EST: gi|20449765|gb|BQ253889.1|BQ253889
EST:     AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAGgtatgttaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
EST: gi|22523298|gb|BU082109.1|BU082109
EST:     AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAGgtatgttaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
EST: gi|20497984|gb|BQ272914.1|BQ272914
EST:     AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAGgtatgttaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
EST: gi|120533746|gb|EH261879.1|EH261879
EST:     AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTG
genomic: AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAGgtatgttaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTG
EST: gi|17519820|gb|BM188862.1|BM188862
EST:     AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAGgtatgttaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
EST: gi|120533723|gb|EH261856.1|EH261856
EST:     AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAGgtatgttaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgttactattataaccggagcatttactctgtgtagtatttttaatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGTCTCTCGGCAGAGGGATTTGATGTTGTTTATGACATAAATG
                                               tttccc  CT-rich tract
                                 tgtagtatttttaatt  TA-rich tract