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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttaattgtaaatgtaaactacaaaacattggactaaccttgtaaggcatgatgtgaatgtatgacttttcatctttgttactattataaccggagcatttactctgtgtagtatttttaatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGTCTCTCGGCAGAGGGATTTGATGTTGTTTATGACATAAATGGTGTGCAAA

Basic information

species Glycine max
transcript GLYMA19G41540.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G41540.1 (Glycine max), 3'ss of exon 3
lower sequence: AT1G09340.1 (Arabidopsis thaliana), 3'ss of exon 3
gtatgttaattgtaaatgtaaactacaaaacattggactaaccttgtaaggcatgatgtgaatg-tatgacttttcatctttgttactattataaccggagcatttactctgtgtagtatttttaatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGTCTCTCGGCAGAGGGATTTGATGTTGTTTATGACATAAATGGTGTGCAAA
||||   |    |   ||||||  || |        ||| |  |  |||   |   |    ||| || ||  ||  ||  ||   | |   ||||    |    ||  |||  |            ||| | ||||  | || |||||||||||||| ||||||| ||||||||| || || ||||| || ||||| || || |||||||||||||| || || |         
gtattacatgaatccttgtaaaaaactagtatgcacactcaaat-ataatatacatttcagatgataggaacttggatgattaggattccaataaaataaatgatttttctcggcc----------ttttctagATTCTTCACTTGAAAGGAGACAGAAAGGACTATGACTTTGTGAAGTCAAGTCTTTCAGCAGAAGGCTTCGATGTTGTTTATGATATCAACG---------

upper sequence: GLYMA19G41540.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv14s0060g00820.t01 (Vitis vinifera), 3'ss of exon 3
gtatgttaattgtaaatgtaaactacaaaacattggactaaccttgtaaggcatgatgtgaat-gtatgacttttcatctttg---ttactattataaccggagcat-------ttactctgtgtagtatttttaatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGTCTCTCGGCAGAGGGATTTGATGTTGTTTATGACATAAATGGTGTGCAAA
    ||  ||| |  |  |   |||||  | |||   || ||    | |  |  | | | | | ||||   || ||   |  |   | || |  ||   |  ||          ||  |   ||   | |||||  |||   || | |||||||||||||||||||| ||||||||||| ||||| ||| |||||||  | || || || ||||||||||| || || |||||||         
----gtatattatgtaccttgtctacatga-att---ctcactccttcatccccggtttcattagtattcattctctcttgaggaatgaccagcatgttccaagtgcatgaaagttgtttcttgattttttttttctttggtagGTTTTGCATTTGAAAGGAGACAGAAAGGACTTTGAATTTGTGAAAACCAGTCTTGCAGCTGAAGGCTTTGATGTTGTCTACGATATAAATG---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209723632|gb|BW682750.1|BW682750
EST:     AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAGgtatgttaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
EST: gi|213603774|gb|DB966860.1|DB966860
EST:     AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAGgtatgttaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
EST: gi|209696686|gb|BW672890.1|BW672890
EST:     AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAGgtatgttaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGT
EST: gi|120533746|gb|EH261879.1|EH261879
EST:     AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTG
genomic: AACAGTTGCCAGGTGAATCAGACAATGATTATGCTGATTTTTCTTCCAAGgtatgttaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgttactattataaccggagcatttactctgtgtagtatttttaatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGTCTCTCGGCAGAGGGATTTGATGTTGTTTATGACATAAATGGTGTGCAAA
                                               tttccc  CT-rich tract
                                 tgtagtatttttaatt  TA-rich tract