1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gcaagtagatatataatacctatatttgtcaaaacttatttttacaaacatttggtacaatgaagctgttaatactaaaatgaaatactactactatagtacatagtccatgcctttgccaaaactatgagaaatggatgattatttctaattcatggactaattttaagagattatcgttttcagGTGAGAAGAAGTCGGATCAGTGAACGAATAAGAAAATTGCAAGAGCTTGTTCCAAACATGGACAAG
species | Glycine max |
transcript | GLYMA19G32600.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCAGAGCTAAGAGAGGCTTTGCTACACATCCTCGAAGCATTGCCGAAAGG GTGAGAAGAAGTCGGATCAGTGAACGAATAAGAAAATTGCAAGAGCTTGTTEST: gi|51341156|gb|CO982473.1|CO982473
genomic: TCAGAGCTAAGAGAGGCTTTGCTACACATCCTCGAAGCATTGCCGAAAGGgcaagtagat ... tcgttttcagGTGAGAAGAAGTCGGATCAGTGAACGAATAAGAAAATTGCAAGAGCTTGTT
EST: TCAGAGCTAAGAGAGGCTTTGCTACACATCCTCGAAGCATTGCCGAAAGG GTGAGAAGAAGTCGGATCAGTGAACGAATAAGAAAATTGCAAGAGCTTGTTEST: gi|151403622|gb|EV273432.1|EV273432
genomic: TCAGAGCTAAGAGAGGCTTTGCTACACATCCTCGAAGCATTGCCGAAAGGgcaagtagat ... tcgttttcagGTGAGAAGAAGTCGGATCAGTGAACGAATAAGAAAATTGCAAGAGCTTGTT
EST: TCAGAGCTAAGAGAGGCTTTGCTACACATCCTCGAAGCATTGCCGAAAGG GTGAGAAGAAGTCGGATCAGTGAACGAATAAGAAAATTGCAAGAGCTTGTTEST: gi|254314306|gb|GR824547.1|GR824547
genomic: TCAGAGCTAAGAGAGGCTTTGCTACACATCCTCGAAGCATTGCCGAAAGGgcaagtagat ... tcgttttcagGTGAGAAGAAGTCGGATCAGTGAACGAATAAGAAAATTGCAAGAGCTTGTT
EST: TCAGAGCTAAGAGAGGCTTTGCTACACATCCTCGAAGCATTGCCGAAAGG GTGAGAAGAAGTCGGATCAGTGAACGAATAAGAAAATTGCAAGAGCTTGTTEST: gi|254341127|gb|GR854855.1|GR854855
genomic: TCAGAGCTAAGAGAGGCTTTGCTACACATCCTCGAAGCATTGCCGAAAGGgcaagtagat ... tcgttttcagGTGAGAAGAAGTCGGATCAGTGAACGAATAAGAAAATTGCAAGAGCTTGTT
EST: TCAGAGCTAAGAGAGGCTTTGCTACACATCCTCGAAGCATTGCCGAAAGG GTGAGAAGAAGTCGGATCAGTGAACGAATAAGAAAATTGCAAGAGCTTGTT
genomic: TCAGAGCTAAGAGAGGCTTTGCTACACATCCTCGAAGCATTGCCGAAAGGgcaagtagat ... tcgttttcagGTGAGAAGAAGTCGGATCAGTGAACGAATAAGAAAATTGCAAGAGCTTGTT
aaatggatgattatttctaattcatggactaattttaagagattatcgttttcagGTGAGAAGAAGTCGGATCAGTGAACGAATAAGAAAATTGCAAGAGCTTGTTCCAAACATGGACAAG
gactaat putative branch site (score: 2)
tcgttttc putative PPT
taattttaagagatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagtagatatataatacctatatttgtcaaaacttatttttacaaacatttggtacaatgaagctgttaatactaaaatgaaatactactactatagtacatagtccatgcctttgccaaaactatgagaaatggatgattatttctaattcatggactaattttaagagattatcgttttcagGTGAGAAGAAGTCGGATCAGTGAACGAATAAGAAAATTGCAAGAGCTTGTTCCAAACATGGACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA