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...ttgttttattgtatacttcatcctaacgtataagttcatctgttttattgatacatgtttgaacagtttgtaaacctaacatatatgagctgatgtgcagCTATCTTGTTCCAAACAAAGGTGCTTCTCCCCAACTGTTGGAGGATGTAGAGAAGTTTTTACAGCTG
species | Glycine max |
transcript | GLYMA19G24250.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TATGCAAGGACAAAAATATCTGATGATGAATTGAGAAACCGGTTGCGTGG CTATCTTGTTCCAAACAAAGGTGCTTCTCCCCAACTGTTGGAGGATGTAGAEST: gi|298180491|gb|HO022044.1|HO022044
genomic: TATGCAAGGACAAAAATATCTGATGATGAATTGAGAAACCGGTTGCGTGGgtgagacttt ... tgatgtgcagCTATCTTGTTCCAAACAAAGGTGCTTCTCCCCAACTGTTGGAGGATGTAGA
EST: TATGCAAGGACAAAAATATCTGATGATGAATTGAGAAACCGGTTGCGTGG CTATCTTGTTCCAAACAAAGGTGCTTCTCCCCAACTGTTGGAGGATGTACAEST: gi|213594579|gb|DB957998.1|DB957998
genomic: TATGCAAGGACAAAAATATCTGATGATGAATTGAGAAACCGGTTGCGTGGgtgagacttt ... tgatgtgcagCTATCTTGTTCCAAACAAAGGTGCTTCTCCCCAACTGTTGGAGGATGTAGA
EST: TATGCAAGGACAAAAATATCTGATGATGAATTGAGAAACCGGTTGCGTGG CTATCTTGTTCCAAACAAAGGTGCTTCTCCCCAACTGTTGGAGGATGTAGAEST: gi|213611006|gb|DB970933.1|DB970933
genomic: TATGCAAGGACAAAAATATCTGATGATGAATTGAGAAACCGGTTGCGTGGgtgagacttt ... tgatgtgcagCTATCTTGTTCCAAACAAAGGTGCTTCTCCCCAACTGTTGGAGGATGTAGA
EST: TATGCAAGGACAAAAATATCTGATGATGAATTGAGAAACCGGTTGCGTGG CTATCTTGTTCCAAACAAAGGTGCTTCTCCCCAACTGTTGGAGGATGTAGAEST: gi|298167590|gb|HO012853.1|HO012853
genomic: TATGCAAGGACAAAAATATCTGATGATGAATTGAGAAACCGGTTGCGTGGgtgagacttt ... tgatgtgcagCTATCTTGTTCCAAACAAAGGTGCTTCTCCCCAACTGTTGGAGGATGTAGA
EST: TATGCAAGGACAAAAATATCTGATGATGAATTGAGAAACCGGTTGCGTGG CTATCTTGTTCCAAACAAAGGTGCTTCTCCCCAACTGTTGGAGGATGTAGAEST: gi|19053331|gb|BM731998.1|BM731998
genomic: TATGCAAGGACAAAAATATCTGATGATGAATTGAGAAACCGGTTGCGTGGgtgagacttt ... tgatgtgcagCTATCTTGTTCCAAACAAAGGTGCTTCTCCCCAACTGTTGGAGGATGTAGA
EST: TATGCAAGGACAAAAATATCTGATGATGAATTGAGAAACCGGTTGCGTGG CTATCTTGTTCCAAACAAAGGTGCTTCTCCCCAACTGTTGGAGGATGTAGAEST: gi|254334914|gb|GR844699.1|GR844699
genomic: TATGCAAGGACAAAAATATCTGATGATGAATTGAGAAACCGGTTGCGTGGgtgagacttt ... tgatgtgcagCTATCTTGTTCCAAACAAAGGTGCTTCTCCCCAACTGTTGGAGGATGTAGA
EST: TATGCAAGGACAAAAATATCTGATGATGAATTGAGAAACCGGTTGCGTGG CTATCTTGTTCCAAACAAAGGTGCTTCTCCCCAACTGTTGGAGGATGTAGA
genomic: TATGCAAGGACAAAAATATCTGATGATGAATTGAGAAACCGGTTGCGTGGgtgagacttt ... tgatgtgcagCTATCTTGTTCCAAACAAAGGTGCTTCTCCCCAACTGTTGGAGGATGTAGA
tattgatacatgtttgaacagtttgtaaacctaacatatatgagctgatgtgcagCTATCTTGTTCCAAACAAAGGTGCTTCTCCCCAACTGTTGGAGGATGTAGAGAAGTTTTTACAGCTG
taacatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgttttattgtatacttcatcctaacgtataagttcatctgttttattgatacatgtttgaacagtttgtaaacctaacatatatgagctgatgtgcagCTATCTTGTTCCAAACAAAGGTGCTTCTCCCCAACTGTTGGAGGATGTAGAGAAGTTTTTACAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG