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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattaatttttagatacccctcatttatttaattgctagcaagcatattctatttgttaaaatgaaactgtttgagaagataacaggaaaaattgttttctggcacagGTTTATTGTTCTCCGTTTTAATAACAGCAGTATTTACTGAGGCAATAAAAAATGCAGTAGGTCGACCTCGACCAGACTTCTTCTGGCGATGTTTTCCAGA

Basic information

species Glycine max
transcript GLYMA18G53100.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G53100.2 (Glycine max), 3'ss of exon 3
lower sequence: AT3G02600.5 (Arabidopsis thaliana), 3'ss of exon 3
gtattaatttttagatacccctcatttatttaattgctagcaagcatattctatttgttaaaatgaaactgtttgagaagataacag---gaaaaattg---ttttctg--gcacagGTTTATTGTTCTCCGTTTTAATAACAGCAGTATTTACTGAGGCAATAAAAAATGCAGTAGGTCGACCTCGACCAGACTTCTTCTGGCGATGTTTTCCAGA
          ||||| ||     ||||       ||   |  || |   | |  ||   ||||||      || |   | ||||      | ||| |||   |||  ||  |  ||||| | || | ||| ||| |  | ||||||||| |||| || |||||||| |||||||| |||||||| || || |||||||||||||| |||||||||||
---------gttagaaacttagaattt------ctgaaggagagtaccgtttgctt--caaaatgtcttctttcgcatatataattaacagtaaagttggcctttcttgatgtgcagGTCTCTTATACTCTGTTCTGGTGACAGCAGTACTTACCGATGCAATAAAGAATGCAGTTGGTCGACCACGTCCTGACTTCTTCTGGCGTTGTTTTCCAGA

upper sequence: GLYMA18G53100.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv14s0006g02480.t01 (Vitis vinifera), 3'ss of exon 2
gtattaa--tttttagatacccctcatttattta-attgctagcaagcatattctatttgttaaaatgaaactgtttgaga-----agataacaggaaaaattgttttctggcacagGTTTATTGTTCTCCGTTTTAATAACAGCAGTATTTACTGAGGCAATAAAAAATGCAGTAGGTCGACCTCGACCAGACTTCTTCTGGCGATGTTTTCCAGA
||  |||  | ||| | | | | |  ||||| |  | |  |  |     ||| | ||  |     |||    | ||||| |     |  | |  |    | || ||| || |  ||||  | || ||||| ||| |  ||||||  ||  ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||
gtgataagatctttggctcctcatggtttatctgtaataattcctcttgtatgcaataggaattgatgtg-ttatttgaaagattgaactgatggtttgatttatttgctagagcagGCCTGTTATTCTCTGTTCTGGTAACAGTGGTTATTACTGATGCAATAAAAAATGCAGTTGGTCGACCTCGACCAGACTTCTTTTGGCGTTGTTTTCCTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192294776|gb|FG986625.1|FG986625
EST:     TGTCTACATCCGAAGGAGAGACGTCTATGATCTTCATCATGCTGTGCTGG                         GTTTATTGTTCTCCGTTTTAATAACAGCAGTATTTACTGAGGCAATAAAAA
genomic: TGTCTACATCCGAAGGAGAGACGTCTATGATCTTCATCATGCTGTGCTGGgtattaattt ... tctggcacagGTTTATTGTTCTCCGTTTTAATAACAGCAGTATTTACTGAGGCAATAAAAA
EST: gi|18040504|gb|BM308798.1|BM308798
EST:     TGTCTACATCCGAAGGAGAGACGTCTATGATCTTCATCATGCTGTGCTGG                         GTTTATTGTTCTCCGTTTTAATAACAGCAGTATTTACTGAGGCAATAAAAA
genomic: TGTCTACATCCGAAGGAGAGACGTCTATGATCTTCATCATGCTGTGCTGGgtattaattt ... tctggcacagGTTTATTGTTCTCCGTTTTAATAACAGCAGTATTTACTGAGGCAATAAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttaaaatgaaactgtttgagaagataacaggaaaaattgttttctggcacagGTTTATTGTTCTCCGTTTTAATAACAGCAGTATTTACTGAGGCAATAAAAAATGCAGTAGGTCGACCTCGACCAGACTTCTTCTGGCGATGTTTTCCAGA
                        agataac  putative branch site (score: 3)
                                       ttgttttct  putative PPT
                                  aaaaattgttttct  TA-rich tract