1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ggatatagttatatacttcaaatataactaccctggttttgttatgcatttgatggagaggctgatatgagtgttatctgattatgctacactgtttcagGAGTGCATGCTTGGTCTTTTAAAATCAAAAACTGTGATATACATTACTCATCAAGTAGAATTCTTACCTGATGCTGATCTAATATTG
species | Glycine max |
transcript | GLYMA18G09000.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
gcatttgatggagaggctgatatgagtgttatctgattatgctacactgtttcagGAGTGCATGCTTGGTCTTTTAAAATCAAAAACTGTGATATACATTACTCATCAAGTAGAATTCTTACCTGATGCTGATCTAATATTG
atctgat putative branch site (score: 4)
ctgtttc putative PPT
tgattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggatatagttatatacttcaaatataactaccctggttttgttatgcatttgatggagaggctgatatgagtgttatctgattatgctacactgtttcagGAGTGCATGCTTGGTCTTTTAAAATCAAAAACTGTGATATACATTACTCATCAAGTAGAATTCTTACCTGATGCTGATCTAATATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - -aaatataa
- - - - - - - - - - - - - -ctaccct
- - - - - - - - - - - - - - - - - ggttttg
- - - - - - - - - - - - - - - - - - - - - - tgcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - ggagagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgagtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgcta