1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aactagcaccaatacataactctgttactgatgaaatttgtattgtttgtaaagattgtcatagatgcaatgtttaccatctgattctctgcttcttcagCCTGCTATTTATGTCACAAGTCTTGCTGCTATAGAGCTACTTCGTGCACGTGAAGGAGGTCAGCAGATTATTGACTCAGTTGATGTTACATGTGGTTTAA
species | Glycine max |
transcript | GLYMA18G06500.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TATGCATCAATGGGCCAAAAGAAAAGTTAGATTCCACCGTTATTAGCCAG CCTGCTATTTATGTCACAAGTCTTGCTGCTATAGAGCTACTTCGTGCACGTEST: gi|26048193|gb|CA784752.1|CA784752
genomic: TATGCATCAATGGGCCAAAAGAAAAGTTAGATTCCACCGTTATTAGCCAGgtatatgctt ... gcttcttcagCCTGCTATTTATGTCACAAGTCTTGCTGCTATAGAGCTACTTCGTGCACGT
EST: TATGCATCAATGGGCCAAAAGAAAAGTTAGATTCCACCGTTATTAGCCAG CCTGCTATTTATGTCACAAGTCTTGCTGCTATAGAGCTACTTCGTGCACGT
genomic: TATGCATCAATGGGCCAAAAGAAAAGTTAGATTCCACCGTTATTAGCCAGgtatatgctt ... gcttcttcagCCTGCTATTTATGTCACAAGTCTTGCTGCTATAGAGCTACTTCGTGCACGT
tttgtaaagattgtcatagatgcaatgtttaccatctgattctctgcttcttcagCCTGCTATTTATGTCACAAGTCTTGCTGCTATAGAGCTACTTCGTGCACGTGAAGGAGGTCAGCAGATTATTGACTCAGTTGATGTTACATGTGGTTTAA
atctgat putative branch site (score: 4)
ttctctgcttcttc CT-rich tract
aatgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactagcaccaatacataactctgttactgatgaaatttgtattgtttgtaaagattgtcatagatgcaatgtttaccatctgattctctgcttcttcagCCTGCTATTTATGTCACAAGTCTTGCTGCTATAGAGCTACTTCGTGCACGTGAAGGAGGTCAGCAGATTATTGACTCAGTTGATGTTACATGTGGTTTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - caccaat
- - - - - - - - - - - - - actgatg
- - - - - - - - - - - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatctg