1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatcattacaacaatttatcattttttaattgattttatcagatttagtcctcggagtgttgattgaagtttttgacatatgcccacttgttgtagttaaggtttttgtaacttagcttatggccttgaaataaatctgttggcagGTTAATCCTGACGACATTGTGTTTGGGGGATGGGATATCAGCAACATGAACCTGGCTGATGCCATGGCCAGGGCAAAGGTGTTTGACATCGATTTGCAGA
species | Glycine max |
transcript | GLYMA18G02210.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCTTCCAGGGAGAGGAAATCTATGCCCCATTCAAGAGTCTGCTTCCAATG GTTAATCCTGACGACATTGTGTTTGGGGGATGGGATATCAGCAACATGAACEST: gi|9986214|gb|BE660322.1|BE660322
genomic: CCTTCCAGGGAGAGGAAATCTATGCCCCATTCAAGAGTCTGCTTCCAATGgtatcattac ... ctgttggcagGTTAATCCTGACGACATTGTGTTTGGGGGATGGGATATCAGCAACATGAAC
EST: CCTTCCAGGGAGAGGAAATCTATGCCCCATTCAAGAGTCTGCTTCCAATG GTTAATCCTGACGACATTGTGTTTGGGGGATGGGAEST: gi|27427007|gb|CA938527.1|CA938527
genomic: CCTTCCAGGGAGAGGAAATCTATGCCCCATTCAAGAGTCTGCTTCCAATGgtatcattac ... ctgttggcagGTTAATCCTGACGACATTGTGTTTGGGGGATGGGA
EST: CCTTCCAGGGAGAGGAAATCTATGCCCCATTCAAGAGTCTGCTTCCAATG GTTAATCCTGACGACATTGTGTTTGGGGGATGGGATATCAGCAACATGAACEST: gi|6667615|gb|AW279066.1|AW279066
genomic: CCTTCCAGGGAGAGGAAATCTATGCCCCATTCAAGAGTCTGCTTCCAATGgtatcattac ... ctgttggcagGTTAATCCTGACGACATTGTGTTTGGGGGATGGGATATCAGCAACATGAAC
EST: CCTTCCAGGGAGAGGAAATCTATGCCCCATTCAAGAGTCTGCTTCCAATG GTTAATCCTGACGACATTGTGTTTGGGGGATGGGATATCAGCAACATGAACEST: gi|120530142|gb|EH258276.1|EH258276
genomic: CCTTCCAGGGAGAGGAAATCTATGCCCCATTCAAGAGTCTGCTTCCAATGgtatcattac ... ctgttggcagGTTAATCCTGACGACATTGTGTTTGGGGGATGGGATATCAGCAACATGAAC
EST: CCTTCCAGGGAGAGGAAATCTATGCCCCATTCAAGAGTCTGCTTCCAATG GTTAATCCTGACGACATTGTGTTTGGGGGATGGGATATCAGCAACATGAAC
genomic: CCTTCCAGGGAGAGGAAATCTATGCCCCATTCAAGAGTCTGCTTCCAATGgtatcattac ... ctgttggcagGTTAATCCTGACGACATTGTGTTTGGGGGATGGGATATCAGCAACATGAAC
tgtagttaaggtttttgtaacttagcttatggccttgaaataaatctgttggcagGTTAATCCTGACGACATTGTGTTTGGGGGATGGGATATCAGCAACATGAACCTGGCTGATGCCATGGCCAGGGCAAAGGTGTTTGACATCGATTTGCAGA
ttgtaac putative branch site (score: 2)
ttgaaataaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcattacaacaatttatcattttttaattgattttatcagatttagtcctcggagtgttgattgaagtttttgacatatgcccacttgttgtagttaaggtttttgtaacttagcttatggccttgaaataaatctgttggcagGTTAATCCTGACGACATTGTGTTTGGGGGATGGGATATCAGCAACATGAACCTGGCTGATGCCATGGCCAGGGCAAAGGTGTTTGACATCGATTTGCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG