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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcagactgagtatctctttcctctcctctttatggcatagtttgtgcagaaataaaattttgtcaatggttttatgttattggacttgataatggtatgctaacggtgcataacaatttgcagTTGAATCTCCCATCTGGCCTGCTTCCCTCCATTGATCTTTCTTACATTGAAGACAGATATGCAGGTCGCCAGGCTTGGTCTTTTATGAATAATGGTAACA

Basic information

species Glycine max
transcript GLYMA18G01710.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193618680|gb|FK566728.1|FK566728
EST:     TTTTCGGATTCTTTATAGGAGTATCAATTCCAACATTGTCAATAACAAAG                         TTGAATCTCCCATCTGGCCTGCTTCCCTCCATTGATCTTTCTTACATTGAA
genomic: TTTTCGGATTCTTTATAGGAGTATCAATTCCAACATTGTCAATAACAAAGgtgcagactg ... caatttgcagTTGAATCTCCCATCTGGCCTGCTTCCCTCCATTGATCTTTCTTACATTGAA
EST: gi|254315635|gb|GR825444.1|GR825444
EST:     TTTTCGGATTCTTTATAGGAGTATCAATTCCAACATTGTCAATAACAAAG                         TTGAATCTCCCATCTGGCCTGCTTCCCTCCATTGATCTTTCTTACATTGAA
genomic: TTTTCGGATTCTTTATAGGAGTATCAATTCCAACATTGTCAATAACAAAGgtgcagactg ... caatttgcagTTGAATCTCCCATCTGGCCTGCTTCCCTCCATTGATCTTTCTTACATTGAA
EST: gi|17964287|gb|BM271024.1|BM271024
EST:     TTTTCGGATTCTTTATAGGAGTATCAATTCCAACATTGTCAATAACAAAG                         TTGAATCTCCCATCTGGCCTGCTTCCCTCCATTGATCTTTCTTACATTGAA
genomic: TTTTCGGATTCTTTATAGGAGTATCAATTCCAACATTGTCAATAACAAAGgtgcagactg ... caatttgcagTTGAATCTCCCATCTGGCCTGCTTCCCTCCATTGATCTTTCTTACATTGAA
EST: gi|192302135|gb|FG995815.1|FG995815
EST:     TTTTCGGATTCTTTATAGGAGTATCAATTCCAACATTGTCAATAACAAAG                         TTGAATCTCCCATCTGGCCTGCTTCCCTCCATTGATCTTTCTTACATTGAA
genomic: TTTTCGGATTCTTTATAGGAGTATCAATTCCAACATTGTCAATAACAAAGgtgcagactg ... caatttgcagTTGAATCTCCCATCTGGCCTGCTTCCCTCCATTGATCTTTCTTACATTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttatgttattggacttgataatggtatgctaacggtgcataacaatttgcagTTGAATCTCCCATCTGGCCTGCTTCCCTCCATTGATCTTTCTTACATTGAAGACAGATATGCAGGTCGCCAGGCTTGGTCTTTTATGAATAATGGTAACA
                                         ataacaattt  TA-rich tract