1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gttagcactcctctcttcctgatatgtcaagttcactgttagaatatcttgaaagactgagttgtattattcaactttaatatttgctctgcctgtatagGTCATGCTAACTGATTTTGGACTGTCAAAAGAGATTAATGAATTGGGGAGATCCAACTCTTTTTGTGGGACTGTAGAATACATGGCTCCAGAAATCCTAC
species | Glycine max |
transcript | GLYMA17G10270.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCATCGAGATCTTAAGCCCGAAAACATTCTTATGGATGCTGATGGGCAT GTCATGCTAACTGATTTTGGACTGTCAAAAGAGATTAATGAATTGGGGAGAEST: gi|192296181|gb|FG991551.1|FG991551
genomic: TGCATCGAGATCTTAAGCCCGAAAACATTCTTATGGATGCTGATGGGCATgtaataatgc ... gcctgtatagGTCATGCTAACTGATTTTGGACTGTCAAAAGAGATTAATGAATTGGGGAGA
EST: TGCATCGAGATCTTAAGCCCGAAAACATTCTTATGGATGCTGATGGGCAT GTCATGCTAACTGATTTTGGACTGTCAAAAGAGATTAATGAATTGGGGAGAEST: gi|192318491|gb|FK006163.1|FK006163
genomic: TGCATCGAGATCTTAAGCCCGAAAACATTCTTATGGATGCTGATGGGCATgtaataatgc ... gcctgtatagGTCATGCTAACTGATTTTGGACTGTCAAAAGAGATTAATGAATTGGGGAGA
EST: TGCATCGAGATCTTAAGCCCGAAAACATTCTTATGGATGCTGATGGGCAT GTCATGCTAACTGATTTTGGACTGTCAAAAGAGATTAATGAATTGGGGAGAEST: gi|22523194|gb|BU082005.1|BU082005
genomic: TGCATCGAGATCTTAAGCCCGAAAACATTCTTATGGATGCTGATGGGCATgtaataatgc ... gcctgtatagGTCATGCTAACTGATTTTGGACTGTCAAAAGAGATTAATGAATTGGGGAGA
EST: TGCATCGAGATCTTAAGCCCGAAAACATTCTTATGGATGCTGATGGGCAT GTCATGCTAACTGATTTTGGACTGTCAAAAGAGATTAATGAATTGGGGAGAEST: gi|192318492|gb|FK006164.1|FK006164
genomic: TGCATCGAGATCTTAAGCCCGAAAACATTCTTATGGATGCTGATGGGCATgtaataatgc ... gcctgtatagGTCATGCTAACTGATTTTGGACTGTCAAAAGAGATTAATGAATTGGGGAGA
EST: TGCATCGAGATCTTAAGCCCGAAAACATTCTTATGGATGCTGATGGGCAT GTCATGCTAACTGATTTTGGACTGTCAAAAGAGATTAATGAATTGGGGAGA
genomic: TGCATCGAGATCTTAAGCCCGAAAACATTCTTATGGATGCTGATGGGCATgtaataatgc ... gcctgtatagGTCATGCTAACTGATTTTGGACTGTCAAAAGAGATTAATGAATTGGGGAGA
atcttgaaagactgagttgtattattcaactttaatatttgctctgcctgtatagGTCATGCTAACTGATTTTGGACTGTCAAAAGAGATTAATGAATTGGGGAGATCCAACTCTTTTTGTGGGACTGTAGAATACATGGCTCCAGAAATCCTAC
ctttaat putative branch site (score: 4)
ctctgcct putative PPT
ttgtattattcaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagcactcctctcttcctgatatgtcaagttcactgttagaatatcttgaaagactgagttgtattattcaactttaatatttgctctgcctgtatagGTCATGCTAACTGATTTTGGACTGTCAAAAGAGATTAATGAATTGGGGAGATCCAACTCTTTTTGTGGGACTGTAGAATACATGGCTCCAGAAATCCTAC
- - -cactcct
- - - - - - ctcttcc
- - - - - - - - - - - - tgtcaag
- - - - - - - - - - - - - - - - - -ctgttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgagtt