1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttttgttaccttttgtagattttcaaggggggttgcattttttatccctaactattatttgaagtaattttgaccatcaaaccccattcctcttgtgcagATAATGTATAGTAAAGGTTTGGAAATGCTGAAAATATTCAAAAACCATAATTTGAAGACATCTTTGCTTGATGACTTTATGTATTATGAAAATCGTCAGA
species | Glycine max |
transcript | GLYMA17G04270.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TAGAGAACAATGAGAACAAACCTGTCACTAATAGCAGAGACACACAAGAG ATAATGTAATAAAGTAAAAGGTTTGGAAATGCT
genomic: TAGAGAACAATGAGAACAAACCTGTCACTAATAGCAGAGACACACAAGAGgtatgtatat ... tcttgtgcagATAATGTA-TA--GTAAA-GGTTTGGAAATGCT
ccctaactattatttgaagtaattttgaccatcaaaccccattcctcttgtgcagATAATGTATAGTAAAGGTTTGGAAATGCTGAAAATATTCAAAAACCATAATTTGAAGACATCTTTGCTTGATGACTTTATGTATTATGAAAATCGTCAGA
ccccattcctcttgt CT-rich tract
actattatttgaagta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttgttaccttttgtagattttcaaggggggttgcattttttatccctaactattatttgaagtaattttgaccatcaaaccccattcctcttgtgcagATAATGTATAGTAAAGGTTTGGAAATGCTGAAAATATTCAAAAACCATAATTTGAAGACATCTTTGCTTGATGACTTTATGTATTATGAAAATCGTCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- -tgttacc
- - - - - - - - - - - - - ggggggt
- - - - - - - - - - - - - - - - -tgcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccatt