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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatgaaatctgaactcatcaatgaatcactgcattgctttgttattctcaaatccttacattggttatatttttatttttcacagCACACGGAAAGGGAATTTGTTTTGAAGTTTTCAGCATTGGAGATCTATAATGAATCTGTCAGGGACCTCCTTAGTGTGGACAGTACACCTCTTAGACTTC

Basic information

species Glycine max
transcript GLYMA16G24250.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G24250.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv04s0023g03060.t01 (Vitis vinifera), 3'ss of exon 3
gtaaatgaaatctgaactcatcaatgaatcactgcatt----gctttgttatt-ctcaaatccttacattggttatatttttattt-ttcacagCACACGGAAAGGGAATTTGTTTTGAAGTTTTCAGCATTGGAGATCTATAATGAATCTGTCAGGGACCTCCTTAGTGTGGACAGTACACCTCTTAGACTTC
||||   |||    |    ||||     |  |  |  |    | |   | ||| | ||  |||||  ||     | ||| ||||   ||   |||||| |||||| |||||| |||||||||| || ||  ||||||| || |||||||||||||| ||||| || ||    || | | | || ||| ||||||
gtaatcaaaacaccactatatcatcccctttcctctctttcagttccataatttcccatttcctttgatgaaaaaaattgttatacatttgtagCACAAGGAAAGAGAATTTCTTTTGAAGTTCTCTGCTATGGAGATTTACAATGAATCTGTCAGAGACCTTCTCAGCTCAGATACTGCTCCGCTTCGACTTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcattgctttgttattctcaaatccttacattggttatatttttatttttcacagCACACGGAAAGGGAATTTGTTTTGAAGTTTTCAGCATTGGAGATCTATAATGAATCTGTCAGGGACCTCCTTAGTGTGGACAGTACACCTCTTAGACTTC
                      tccttac  putative branch site (score: 2)
                                     tatttttatttttc  putative PPT
                         ttacattggttatatt  TA-rich tract