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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcatctctgtttaagtcttgttttatctgtcatgtatattattatgcagtagtgatgccttactagaaatgcatatccagtattttgttgtttgaattttgaaacctacattttagGTGCAATGGATACCAAATTAGTGGAGGCACTCTATTGGAAAGGGATACCAGTTTTTGACATGGGCAGCCATATGAGCACAGTAGATGTTGGCTGGGGGTC

Basic information

species Glycine max
transcript GLYMA16G20730.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G20730.1 (Glycine max), 3'ss of exon 3
lower sequence: AT2G35610.1 (Arabidopsis thaliana), 3'ss of exon 2
gtgagcatctctgtttaagtcttgttttatctgtcatgtatattattatgcagtagtgatgccttactagaaatgcatatccagtattttgttgtttgaattttgaaacctacattttagGTGCAATGGATACCAAATTAGTGGAGGCACTCTATTGGAAAGGGATACCAGTTTTTGACATGGGCAGCCATATGAGCACAGTAGATGTTGGCTGGGGGTC
| || | | || ||| | | |||| | | | || | || | || || || | || || || ||||||| |||||||| || ||| | ||||| | || |||||||| | ||||||||||||||||| ||||||||||||||||| ||||| || ||||| ||
----------------------------gtgagttgtcacttctaatatctatttctgattgtccatttcac-tggctttctgtaagttagtaactttatgttatggggct---ttatagGTGCGATGGATACAAAGTTATTAGAGGCTTTGTACTGGAAAGGCGTTCCAGTTTTTGACATGGGAAGCCATATGAGCACAGTGGATGTCGGGTGGGGTTC

upper sequence: GLYMA16G20730.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv02s0087g00740.t01 (Vitis vinifera), 3'ss of exon 3
gtgagcatctctgtttaagtcttgttttatctgtcatgtatattattatgcagtagtgatgccttactagaaatgc-atatccagtattttg-ttgttt--gaattttgaaacctacattttagGTGCAATGGATACCAAATTAGTGGAGGCACTCTATTGGAAAGGGATACCAGTTTTTGACATGGGCAGCCATATGAGCACAGTAGATGTTGGCTGGGGGTC
|| || || | | | |||| |||| | | | | | || | | | || | || || | | | | |||| ||| ||||||| || ||||||||||||| ||||| ||| ||||||| | ||||||| ||| | ||||| ||||| ||||||||||| ||||||||| |||||||||| ||||| |
--------------gtaggttcctcatt--cggacctgta-attacttccttgaaatatcacttttccacatattctatgtcaattttcaagactgttaaggaagtttgaaattgttgttatagGTGCAATGGACACCAAGTTATTGGAGGCGTTGTATTGGAGAGGTGTTCCAGTCTTTGATATGGGCAGCCACATGAGCACAATAGATGTTGGATGGGGAAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actagaaatgcatatccagtattttgttgtttgaattttgaaacctacattttagGTGCAATGGATACCAAATTAGTGGAGGCACTCTATTGGAAAGGGATACCAGTTTTTGACATGGGCAGCCATATGAGCACAGTAGATGTTGGCTGGGGGTC
 gccttac  putative branch site (score: 3)
 tttgaattttgaaa  TA-rich tract