1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gaatgtttttgtcaacatttcttgcccactcaaattgacttattgacatttatgtttagtataatggctaacagcagtgtgtttatggctttccttatagATGAGGATTCTAATGGGGCAATAGATCAAGAGGAGTTGAAAAAGTGTTTCAGTAAGCTGGAAATTTCTTTTACCGAGGAGGAAATAAATGATCTTTTTGA
species | Glycine max |
transcript | GLYMA16G16060.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAAGATTGATGAGAGCCTTAGAAAATGCAAAGCCATATTTGAGCAGTTTG ATGAGGATTCTAATGGGGCAATAGATCAAGAGGAGTTGAAAAAGTGTTTCAEST: gi|192311803|gb|FK003608.1|FK003608
genomic: AAAGATTGATGAGAGCCTTAGAAAATGCAAAGCCATATTTGAGCAGTTTGgtaggtttcc ... ttccttatagATGAGGATTCTAATGGGGCAATAGATCAAGAGGAGTTGAAAAAGTGTTTCA
EST: AAAGATTGATGAGAGCCTTAGAAAATGCAAAGCCATATTTGAGCAGTTTG ATGAGGATTCTAATGGGGCAATAGATCAAGAGGAGTTGAAAAAGTGTTTCAEST: gi|192311804|gb|FK003609.1|FK003609
genomic: AAAGATTGATGAGAGCCTTAGAAAATGCAAAGCCATATTTGAGCAGTTTGgtaggtttcc ... ttccttatagATGAGGATTCTAATGGGGCAATAGATCAAGAGGAGTTGAAAAAGTGTTTCA
EST: AAAGATTGATGAGAGCCTTAAAAAATGCAAAGCCATATTTGAGCAGTTTG ATGAGGATTCTAATGGGGCAATAGATCAAGAGGAGTTGAAAAAGTGTTTCA
genomic: AAAGATTGATGAGAGCCTTAGAAAATGCAAAGCCATATTTGAGCAGTTTGgtaggtttcc ... ttccttatagATGAGGATTCTAATGGGGCAATAGATCAAGAGGAGTTGAAAAAGTGTTTCA
acatttatgtttagtataatggctaacagcagtgtgtttatggctttccttatagATGAGGATTCTAATGGGGCAATAGATCAAGAGGAGTTGAAAAAGTGTTTCAGTAAGCTGGAAATTTCTTTTACCGAGGAGGAAATAAATGATCTTTTTGA
ggctaac putative branch site (score: 2)
ctttccttat putative PPT
tatgtttagtataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaatgtttttgtcaacatttcttgcccactcaaattgacttattgacatttatgtttagtataatggctaacagcagtgtgtttatggctttccttatagATGAGGATTCTAATGGGGCAATAGATCAAGAGGAGTTGAAAAAGTGTTTCAGTAAGCTGGAAATTTCTTTTACCGAGGAGGAAATAAATGATCTTTTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA