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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttttaatgaaaaagtcttagttggcatattgtgtttttattgttgtcaagcttggattttgatcctcaattccttcattttacagACGTATTCTCCTATACCTCCACATGGGTTCTTGGCATCAAGCCCCCAAGCCCACCCATATATGTGGGGCGTCCAG

Basic information

species Glycine max
transcript GLYMA16G15810.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G15810.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv02s0012g02250.t01 (Vitis vinifera), 3'ss of exon 3
-----------------------gtttttaatgaaaaagtctta-----gttggcatattgtgtttttattgttgtcaagcttggattttgatcctcaattccttcattttacagACGTATTCTCCTATACCTCCACATGGGTTCTTGGCATCAAGCCCCCAAGCCCACCCATATATGTGGGGCGTCCAG
                       | || || | |     |   |     | |  | |||||| |||| ||||||     |  | || ||   |  |   ||  ||  | |||||| | |||||||| ||||||||||||||||||||||| ||||| |||||||| ||||| || |||||||| || |||
gttcctttagtcaaaacttaaaagcttatactaagggttttccattgttgctttcttattgtcttttaattgtttatgtggcttgacttaattttt---tttatttttattacagGCATATTCTCCCATACCTCCACATGGGTTCTTGGCGTCAAGTCCCCAAGCTCACCCTTACATGTGGGGAGTTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtttttattgttgtcaagcttggattttgatcctcaattccttcattttacagACGTATTCTCCTATACCTCCACATGGGTTCTTGGCATCAAGCCCCCAAGCCCACCCATATATGTGGGGCGTCCAG
                          ttttgat  putative branch site (score: 4)
                                tcctcaattccttc  CT-rich tract
     tttattgtt  TA-rich tract