1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gtatcacatgttgctattaaaattttattacacactgttatggtttggaatttttatcttttctagaaattcactaattgttgctattttctgtttccagGTTGCCATCAAATGTGAAGAAGGTCTTCCATCCGATAATTTGCTGTGCTTTATCAGCAGATCTGACAGCATTTGCTTTTGGGTATTTTTCCAAGTCAGGA
species | Glycine max |
transcript | GLYMA16G15800.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTCCATTTTTGCTTGCAGCCACAGTGTTAGGCTACATGGTTGGCTCGGG GTTGCCATCAAATGTGAAGAAGGTCTTCCATCCGATAATTTGCTGTGCTTTEST: gi|151403336|gb|EV273146.1|EV273146
genomic: CTTCCATTTTTGCTTGCAGCCACAGTGTTAGGCTACATGGTTGGCTCGGGgtaaatattt ... ctgtttccagGTTGCCATCAAATGTGAAGAAGGTCTTCCATCCGATAATTTGCTGTGCTTT
EST: CTTCCATTTTTGCTTGCAGCCACAGTGTTAGGCTACATGGTTGGCTCGGG GTTGCCATCAAATGTGAAGAAGGTCTTCCATCCGATAATTTGCTGTGCTTT
genomic: CTTCCATTTTTGCTTGCAGCCACAGTGTTAGGCTACATGGTTGGCTCGGGgtaaatattt ... ctgtttccagGTTGCCATCAAATGTGAAGAAGGTCTTCCATCCGATAATTTGCTGTGCTTT
tggaatttttatcttttctagaaattcactaattgttgctattttctgtttccagGTTGCCATCAAATGTGAAGAAGGTCTTCCATCCGATAATTTGCTGTGCTTTATCAGCAGATCTGACAGCATTTGCTTTTGGGTATTTTTCCAAGTCAGGA
cactaat putative branch site (score: 2)
ctattttctgtttcc putative PPT
tttttatcttttctag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcacatgttgctattaaaattttattacacactgttatggtttggaatttttatcttttctagaaattcactaattgttgctattttctgtttccagGTTGCCATCAAATGTGAAGAAGGTCTTCCATCCGATAATTTGCTGTGCTTTATCAGCAGATCTGACAGCATTTGCTTTTGGGTATTTTTCCAAGTCAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - tgttgct
- - - - - - - - - - - - - - tacacac
- - - - - - - - - - - - - - - - - - - - -ggtttgg