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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttatgcttacaatgagatagtagatctgttagttttgagttcccacattatggatgatgcttatctttatgctatttcttgcttctccagTGTTGCTGCTTTGCGTGGGGTGGGAAAAAATGATTTCTTGGATTGGAAGTCTGAATGATAATATTCTGAACAGAAATGATGGTAAAGATAATGTTGTGAA

Basic information

species Glycine max
transcript GLYMA16G12160.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151411150|gb|EV280961.1|EV280961
EST:     ATGAGAGACCACAACCTATTAATGGCCTATCTA-TGATGACAAAGTCCAG                         TGT-GCTGCTTTGCGTGGGGGTGGG
genomic: ATGAGAGACCACAACCTATTAATGGCCTATCTAATGATGACAAAGTCCAGgtatttatgc ... gcttctccagTGTTGCTGCTTTGCGTGGGG-TGGG
EST: gi|4397331|gb|AI496328.1|AI496328
EST:     ATGAGAGACCACAACCTATTAATGGCCTATCTAATGATGACAAAGTCCAG                         TGTTGCTGCTTTGCGT
genomic: ATGAGAGACCACAACCTATTAATGGCCTATCTAATGATGACAAAGTCCAGgtatttatgc ... gcttctccagTGTTGCTGCTTTGCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagttcccacattatggatgatgcttatctttatgctatttcttgcttctccagTGTTGCTGCTTTGCGTGGGGTGGGAAAAAATGATTTCTTGGATTGGAAGTCTGAATGATAATATTCTGAACAGAAATGATGGTAAAGATAATGTTGTGAA
                                    ctatttcttgcttctc  CT-rich tract
                         ttatctttat  TA-rich tract