Sequence
atgc intronic sequence ATGC exonic sequence...aaattttaacaattcagtttgaggagtaacactagagctgtccttcattcatatttcatttcctctgttcaattgttttactttcttctctttttaccagCTATGAAGTTCTGCTCACTTTGGATAAGGAAAAGCACCGAGTGGATGGTCCAATATATTATTATGTGTTCAATAGTCTTCTGTACTGCTTGCTTGTTATG
Basic information
species | Glycine max |
transcript | GLYMA16G12080.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G12080.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv01s0010g01110.t01 (Vitis vinifera), 3'ss of exon 4
--aaattttaacaattcagtttgaggagtaacactagagctgtccttcattcatatttcatttcctctgttcaattgttttactttcttctctttttaccagCTATGAAGTTCTGCTCACTTTGGATAAGGAAAAGCACCGAGTGGATGGTCCAATATATTATTATGTGTTCAATAGTCTTCTGTACTGCTTGCTTGTTATG
| || | | | || ||| | | ||| || | |||| || | || | | | ||| | ||| |||| | ||||||||||||| | || || ||||| ||||||||||| |||||| || ||||| ||||||||| ||||||||| |||||| | ||||||||||||| |
taagatccttaaatatccttttaat--atgacaaaggattttccctttcttggaaatttctattcgtctcccaaccaccatttttttccttcttgatggcagCTATGAAGTTATCCTGACCTTGGACAAGGAAAAGCATGCAGTGGAAGGACCAATTTATTATTATTTGTTCAATACTCTTCTATTCTGCTTGCTTGTTCTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192324720|gb|FK016851.1|FK016851EST: AGTCATCATGTTGCTACTGTAATTCTTATTGTTCTGTCTTACATTTTTAG CTATGAAGTTCTGCTCACTTTGGATAAAGAAAAGCACCGAGTGGATGGTCC
genomic: AGTCATCATGTTGCTACTGTAATTCTTATTGTTCTGTCTTACATTTTTAGgtatcttttt ... tttttaccagCTATGAAGTTCTGCTCACTTTGGATAAGGAAAAGCACCGAGTGGATGGTCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cattcatatttcatttcctctgttcaattgttttactttcttctctttttaccagCTATGAAGTTCTGCTCACTTTGGATAAGGAAAAGCACCGAGTGGATGGTCCAATATATTATTATGTGTTCAATAGTCTTCTGTACTGCTTGCTTGTTATG
tttcctctgttcaatt CT-rich tract
aattgttttacttt TA-rich tract