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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattatttacttttctcctcaatcctatcctgttgctttttcattgtgctcttgttaccaaaccactgttgacattaatgccatatgttttcagTTTGCCATTCATAACTGCCACGGCTGATGGACCCAAACATATTGAGACCACCATCACAAGGGCTAAATTTGAGGAATTGTGTTCAGATCTTCTTGACAG

Basic information

species Glycine max
transcript GLYMA16G00410.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G00410.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv17s0000g03310.t01 (Vitis vinifera), 3'ss of exon 4
gtattatttacttttctcctcaatcctat-cctgttgctttttcattgtgctcttgttaccaaaccactgttgacattaatgccatatgttttcagTTTGCCATTCATAACTGCCACGGCTGATGGACCCAAACATATTGAGACCACCATCACAAGGGCTAAATTTGAGGAATTGTGTTCAGATCTTCTTGACAG
        ||  ||  |  ||  ||   | ||| ||| |  |  |      |||  |  | |    |    ||| |  |||  | | | ||| ||| ||||| ||||| |||||||| || |||||||||||||| || ||||| ||| | |||||||| |||||||||||||| ||||| ||  | ||||| ||
-------gtatgttgattgtctgtctactgcctattgatgataaaactctttctcatacctatttta--actgatagaaatttc-tgtttttccagCTTGCCGTTCATTACTGCCACTGCAGATGGACCCAAACACATCGAGACTACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAG

upper sequence: GLYMA16G00410.1 (Glycine max), 3'ss of exon 3
lower sequence: EFJ23703 (Selaginella moellendorffii), 3'ss of exon 4
gtattatttacttttctcctcaatcctatcctgttgctttttcattgtgctct-tgttaccaaaccactgttgacattaatgccatatgtttt----cagTTTGCCATTCATAACTGCCACGGCTGATGGACCCAAACATATTGAGACCACCATCACAAGGGCTAAATTTGAGGAATTGTGTTCAGATCTTCTTGACAG
                                           | || ||||| | ||  | |  |    ||| |  | |    || ||| ||    ||| ||||| ||||| || || || || ||||| || || ||||||||  | || || ||  ||||||| ||||||||||||||||||||| | || |||||
-----------------------------------------gtaatgcgctctgttttctctagtcgtccttgtc--tcacagaatttgtcttggaccagCTTGCCTTTCATCACGGCGACTGCGGATGGGCCGAAGCATATTGACGCAACTATGACTCGGGCTAAGTTTGAGGAATTGTGTTCAGATTTGCTGGACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcattgtgctcttgttaccaaaccactgttgacattaatgccatatgttttcagTTTGCCATTCATAACTGCCACGGCTGATGGACCCAAACATATTGAGACCACCATCACAAGGGCTAAATTTGAGGAATTGTGTTCAGATCTTCTTGACAG
                                 cattaat  putative branch site (score: 3)
                                              tgttttc  putative PPT
                                           atatgtttt  TA-rich tract