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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttatttgttcaaattgatttattatgcgaggaatatattatcatcaatccactgatatattgtgtttttaatttagGATACCCATTTCAAATGGAAAGCTTAATATGGGGACATGGCAG

Basic information

species Glycine max
transcript GLYMA15G17340.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31471798|gb|CD413826.1|CD413826
EST:     GATGACATGCCGGCACATATTAAATCGTCGATGTTTGGTTGTGCACTCAT                         GATACCCATTTCAAATGGAAAGCTTAATATGGGGACATGGCAG
genomic: GATGACATGCCGGCACATATTAAATCGTCGATGTTTGGTTGTGCACTCATgtgagttatt ... tttaatttagGATACCCATTTCAAATGGAAAGCTTAATATGGGGACATGGCAG
EST: gi|31469454|gb|CD411482.1|CD411482
EST:     GATGACATGCCGGCACATATTAAATCGTCGATGTTTGGTTGTGCACTCAT                         GATACCCATTTCAAATGGAAAGCTTAATATGGGGACATGGCAG
genomic: GATGACATGCCGGCACATATTAAATCGTCGATGTTTGGTTGTGCACTCATgtgagttatt ... tttaatttagGATACCCATTTCAAATGGAAAGCTTAATATGGGGACATGGCAG
EST: gi|31467141|gb|CD409169.1|CD409169
EST:     GATGACATGCCGGCACATATTAAATCGTCGATGTTTGGTTGTGCACTCAT                         GATACCCATTTCAAATGGAAAGCTTAATATGGGGACATGGCAG
genomic: GATGACATGCCGGCACATATTAAATCGTCGATGTTTGGTTGTGCACTCATgtgagttatt ... tttaatttagGATACCCATTTCAAATGGAAAGCTTAATATGGGGACATGGCAG
EST: gi|31464497|gb|CD406525.1|CD406525
EST:     GATGACATGCCGGCACATATTAAATCGTCGATGTTTGGTTGTGCACTCAT                         GATACCCATTTCAAATGGAAAGCTTAATATGGGGACATGGCAG
genomic: GATGACATGCCGGCACATATTAAATCGTCGATGTTTGGTTGTGCACTCATgtgagttatt ... tttaatttagGATACCCATTTCAAATGGAAAGCTTAATATGGGGACATGGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatgcgaggaatatattatcatcaatccactgatatattgtgtttttaatttagGATACCCATTTCAAATGGAAAGCTTAATATGGGGACATGGCAG
                                            ttttaat  putative branch site (score: 3)
                                         tgttttt  CT-rich tract
                               tgatatattgtgtttt  TA-rich tract