1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tctattttgtcaagggttatataagggagatgctaattttggtgaaaataccagttagtttggatttaaaatttgaattccttaatgatcctttctgcagATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGAGTTCTTCATCGAGACTTGAAACCACAGAATTTGTTGATAGATCGCCGTA
species | Glycine max |
transcript | GLYMA15G14390.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AACATATGGATTCATCTCCAGAGTTTGTGAAAGATCCACGGCAAGTAAAG ATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGAEST: gi|207834854|gb|GD809051.1|GD809051
genomic: AACATATGGATTCATCTCCAGAGTTTGTGAAAGATCCACGGCAAGTAAAGgtgagtgacc ... ctttctgcagATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGA
EST: AACATATGGATTCATCTCCAGAGTTTGTGAAAGATCCACGGCAAGTAAAG ATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGAEST: gi|192301718|gb|FG994412.1|FG994412
genomic: AACATATGGATTCATCTCCAGAGTTTGTGAAAGATCCACGGCAAGTAAAGgtgagtgacc ... ctttctgcagATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGA
EST: AACATATGGATTCATCTCCAGAGTTTGTGAAAGATCCACGGCAAGTAAAG ATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGAEST: gi|298177896|gb|HO021921.1|HO021921
genomic: AACATATGGATTCATCTCCAGAGTTTGTGAAAGATCCACGGCAAGTAAAGgtgagtgacc ... ctttctgcagATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGA
EST: AACATATGGATTCATCTCCAGAGTTTGTGAAAGATCCACGGCAAGTAAAG ATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGAEST: gi|193634954|gb|FK585289.1|FK585289
genomic: AACATATGGATTCATCTCCAGAGTTTGTGAAAGATCCACGGCAAGTAAAGgtgagtgacc ... ctttctgcagATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGA
EST: AACATATGGATTCATCTCCAGAGTTTGTGAAAGATCCACGGCAAGTAAAG ATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTEST: gi|9985866|gb|BE660093.1|BE660093
genomic: AACATATGGATTCATCTCCAGAGTTTGTGAAAGATCCACGGCAAGTAAAGgtgagtgacc ... ctttctgcagATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATT
EST: AACATATGGATTCATCTCCAGAGTTTGTGAAAGATCCACGGCAAGTAAAG ATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGAEST: gi|213592499|gb|DB971641.1|DB971641
genomic: AACATATGGATTCATCTCCAGAGTTTGTGAAAGATCCACGGCAAGTAAAGgtgagtgacc ... ctttctgcagATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGA
EST: AACATATGGATTCATCTCCAGAGTTTGTGAAAGATCCACGGCAAGTAAAG ATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGAEST: gi|209726535|gb|BW658089.1|BW658089
genomic: AACATATGGATTCATCTCCAGAGTTTGTGAAAGATCCACGGCAAGTAAAGgtgagtgacc ... ctttctgcagATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGA
EST: AACATATGGATTCATCTCCAGAGTTTGTGAAAGATCCACGGCAAGTAAAG ATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGAEST: gi|207843775|gb|GD814268.1|GD814268
genomic: AACATATGGATTCATCTCCAGAGTTTGTGAAAGATCCACGGCAAGTAAAGgtgagtgacc ... ctttctgcagATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGA
EST: AACATATGGATTCATCTCCAGAGTTTGTGAAAGATCCACGGCAAGTAAAG ATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGAEST: gi|298179279|gb|HO027750.1|HO027750
genomic: AACATATGGATTCATCTCCAGAGTTTGTGAAAGATCCACGGCAAGTAAAGgtgagtgacc ... ctttctgcagATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGA
EST: AACATATGGATTCATCTCCAGAGTTTGTGAAAGATCCACGGCAAGTAAAG ATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGAEST: gi|298193236|gb|HO033670.1|HO033670
genomic: AACATATGGATTCATCTCCAGAGTTTGTGAAAGATCCACGGCAAGTAAAGgtgagtgacc ... ctttctgcagATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGA
EST: AACATATGGATTCATCTCCGGAGTTTGTGAAAGATCCACGGCAAGTAAAG ATGCTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGAEST: gi|192312082|gb|FK003859.1|FK003859
genomic: AACATATGGATTCATCTCCAGAGTTTGTGAAAGATCCACGGCAAGTAAAGgtgagtgacc ... ctttctgcagATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGA
EST: ATGGATTCATCTCCAGAGTTTGTGAAAGATCCGCGGTAAGTAAAG ATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGAEST: gi|151411049|gb|EV280860.1|EV280860
genomic: ATGGATTCATCTCCAGAGTTTGTGAAAGATCCACGGCAAGTAAAGgtgagtgacc ... ctttctgcagATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGA
EST: AACATATGGATTCATCTCCAGAGTTTGTGAAAGATCCACGGCAAGTAAAG ATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGAEST: gi|41145798|gb|CK606009.1|CK606009
genomic: AACATATGGATTCATCTCCAGAGTTTGTGAAAGATCCACGGCAAGTAAAGgtgagtgacc ... ctttctgcagATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGA
EST: AACATATGGATTCATCTCCAGAGTTTGTGAAAGATCCACGGCAAGTAAAG ATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGAEST: gi|193592171|gb|FK548693.1|FK548693
genomic: AACATATGGATTCATCTCCAGAGTTTGTGAAAGATCCACGGCAAGTAAAGgtgagtgacc ... ctttctgcagATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGA
EST: AACATATGGATTCATCTCCAGAGTTTGTGAAAGATCCACGGCAAGTAAAG ATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGAEST: gi|207770796|gb|GD745910.1|GD745910
genomic: AACATATGGATTCATCTCCAGAGTTTGTGAAAGATCCACGGCAAGTAAAGgtgagtgacc ... ctttctgcagATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGA
EST: AACATATGGATTCATCTCCAGAGTTTGTGAAAGATCCACGGCAAGTAAAG ATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGAEST: gi|209726536|gb|BW658090.1|BW658090
genomic: AACATATGGATTCATCTCCAGAGTTTGTGAAAGATCCACGGCAAGTAAAGgtgagtgacc ... ctttctgcagATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGA
EST: GGCAAGTAAAG ATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGAEST: gi|192302862|gb|FG998544.1|FG998544
genomic: GGCAAGTAAAGgtgagtgacc ... ctttctgcagATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGA
EST: AACATATGGATTCATCTCCAGAGTTTGTGAAAGATCCACGGCAAGTAAAG ATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGAEST: gi|192304397|gb|FG996719.1|FG996719
genomic: AACATATGGATTCATCTCCAGAGTTTGTGAAAGATCCACGGCAAGTAAAGgtgagtgacc ... ctttctgcagATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGA
EST: AACATATGGATTCATCTCCAGAGTTTGTGAAAGATCCACGGCAAGTAAAG ATGTTCCTTTATCAAATTCTCTGTGGCATTACTTACTGTCATTCACATAGA
genomic: AACATATGGATTCATCTCCAGAGTTTGTGAAAGATCCACGGCAAGTAAAGgtgagtgacc ... ctttctgcagATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGA
aaataccagttagtttggatttaaaatttgaattccttaatgatcctttctgcagATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGAGTTCTTCATCGAGACTTGAAACCACAGAATTTGTTGATAGATCGCCGTA
ccttaat putative branch site (score: 4)
tcctttctgc putative PPT
atttaaaatttgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctattttgtcaagggttatataagggagatgctaattttggtgaaaataccagttagtttggatttaaaatttgaattccttaatgatcctttctgcagATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGAGTTCTTCATCGAGACTTGAAACCACAGAATTTGTTGATAGATCGCCGTA
- - - -tgtcaag
- - - - - - - - - - - - - - gatgcta
- - - - - - - - - - - - - - - - - - -tttggtg
- - - - - - - - - - - - - - - - - - - - - - aaaatacc