1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aattcagtctttttttcttttccttcttccttaaccacccacccaaccttatgtctccctttataaaatgttgttaactaatggattttgatgtttacagGTGGGTAGCTGCCCAGAGTGTCTTCTACCACTTGTACAATCAAGTCTCATACATGTCTCTTGATCAGATTTCTCCCTTAACATTCAGCATTGGAAACACA
species | Glycine max |
transcript | GLYMA15G11270.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATTGCAGGCTGGCAAACAGCTGTGTCTCAGATTGGTCCCAATTTTGTATG GTGGGTAGCTGCCCAGAGTGTCTTCTACCACTTGTACAATCAAGTCTCATAEST: gi|27424896|gb|CA936416.1|CA936416
genomic: ATTGCAGGCTGGCAAACAGCTGTGTCTCAGATTGGTCCCAATTTTGTATGgtaagcacaa ... atgtttacagGTGGGTAGCTGCCCAGAGTGTCTTCTACCACTTGTACAATCAAGTCTCATA
EST: ATTGCAGGCTGGCAAACAGCTGTGTCTCAGATTGGTCCCAATTTTGTATG GTGGGTAGCTGCCCAGAGTGTCTTCTACCACTTGTACAATCAAGTCTCATAEST: gi|298191086|gb|HO038565.1|HO038565
genomic: ATTGCAGGCTGGCAAACAGCTGTGTCTCAGATTGGTCCCAATTTTGTATGgtaagcacaa ... atgtttacagGTGGGTAGCTGCCCAGAGTGTCTTCTACCACTTGTACAATCAAGTCTCATA
EST: ATTGCAGGCTGGCAAACAGCTGTGTCTCAGATTGGTCCCAATTTTGTATG GTGGGTAGCTGCCCAGAGTGTCTTCTACCACTTGTACAATCAAGTCTCATAEST: gi|120493159|gb|EH221326.1|EH221326
genomic: ATTGCAGGCTGGCAAACAGCTGTGTCTCAGATTGGTCCCAATTTTGTATGgtaagcacaa ... atgtttacagGTGGGTAGCTGCCCAGAGTGTCTTCTACCACTTGTACAATCAAGTCTCATA
EST: ATTGCAGGCTGGCAAACAGCTGTGTCTCAGATTGGTCCCAATTTTGTATG GTGGGTAGCTGCCCAGAGTGTCTTCTACCACTTGTACAATCAAGTCTCATAEST: gi|7693055|gb|AW761153.1|AW761153
genomic: ATTGCAGGCTGGCAAACAGCTGTGTCTCAGATTGGTCCCAATTTTGTATGgtaagcacaa ... atgtttacagGTGGGTAGCTGCCCAGAGTGTCTTCTACCACTTGTACAATCAAGTCTCATA
EST: ATTGCAGGCTGGCAAACAGCTGTGTCTCAGATTGGTCCCAATTTTGTATG GTGGGTAGCTGCCCAGAGTGTCTTCTACCACTTGTACAATCAAGTCTCATA
genomic: ATTGCAGGCTGGCAAACAGCTGTGTCTCAGATTGGTCCCAATTTTGTATGgtaagcacaa ... atgtttacagGTGGGTAGCTGCCCAGAGTGTCTTCTACCACTTGTACAATCAAGTCTCATA
accttatgtctccctttataaaatgttgttaactaatggattttgatgtttacagGTGGGTAGCTGCCCAGAGTGTCTTCTACCACTTGTACAATCAAGTCTCATACATGTCTCTTGATCAGATTTCTCCCTTAACATTCAGCATTGGAAACACA
tttataaaatgttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattcagtctttttttcttttccttcttccttaaccacccacccaaccttatgtctccctttataaaatgttgttaactaatggattttgatgtttacagGTGGGTAGCTGCCCAGAGTGTCTTCTACCACTTGTACAATCAAGTCTCATACATGTCTCTTGATCAGATTTCTCCCTTAACATTCAGCATTGGAAACACA
- - - - - - - - - - - -ttcttcc
- - - - - - - - - - - - - - - - - - -cccaccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctaatgg