1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gtctcatctttatgagatgatgcaggttttcttttttcttttttccttttttgggtacatgctggtataatgttttacttgtacattttatctctatcagGTCAGTTTACATTGTATACACAGTACTTGGGGATGTCAGCATATATGTTGTGGGGAAGGAAGAGTATGATGAACTTGCTT
species | Glycine max |
transcript | GLYMA15G01150.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GACAATCTTAAGGGTGTAAAAAATGAAGAACTCCTAGTTGCTTGCCATAA GTCAGTTTACATNGTATACACAGTACTNGGGGATGTCAGTATATATGTTGTEST: gi|9820182|gb|BE555692.1|BE555692
genomic: GACAATCTTAAGGGTGTAAAAAATGAAGAACTCCTAGTTGCTTGCCATAAgtgagtatac ... tctctatcagGTCAGTTTACATTGTATACACAGTACTTGGGGATGTCAGCATATATGTTGT
EST: GACAATCTTAAGGGTGTAAAAAATGAAGAACTCCTAGTTGCTTGCCATAA GTCAGTTTACATTGTATACACAGTACTTGNGGATGTCAGCATATATGTTGTEST: gi|9204520|gb|BE330744.1|BE330744
genomic: GACAATCTTAAGGGTGTAAAAAATGAAGAACTCCTAGTTGCTTGCCATAAgtgagtatac ... tctctatcagGTCAGTTTACATTGTATACACAGTACTTGGGGATGTCAGCATATATGTTGT
EST: GACAATCTTAAGGGTGTAAAAAATGAATAACTCCTAGTTGCTTGCCATAT GTCAGTTTACATTGTATACACAGTACTTGGGGATGTEST: gi|6913962|gb|AW395492.1|AW395492
genomic: GACAATCTTAAGGGTGTAAAAAATGAAGAACTCCTAGTTGCTTGCCATAAgtgagtatac ... tctctatcagGTCAGTTTACATTGTATACACAGTACTTGGGGATGT
EST: GACAATCTTAAGGGTGTAAAAAATGAAGAACTCCTAGTTGCTTGCCATAA GTCAGTTTACATTGTATACACAGTACTTGAGGATGTCAGCATATATGTTGTEST: gi|27425069|gb|CA936589.1|CA936589
genomic: GACAATCTTAAGGGTGTAAAAAATGAAGAACTCCTAGTTGCTTGCCATAAgtgagtatac ... tctctatcagGTCAGTTTACATTGTATACACAGTACTTGGGGATGTCAGCATATATGTTGT
EST: GACAATCTTAAGGGTGTAAAAAATGAAGAACTCCTAGTTGCTTGCCATAA GTCAGTTTACATTGTATACACAGTACTTGGGGATGTCAGCATATATGTTGT
genomic: GACAATCTTAAGGGTGTAAAAAATGAAGAACTCCTAGTTGCTTGCCATAAgtgagtatac ... tctctatcagGTCAGTTTACATTGTATACACAGTACTTGGGGATGTCAGCATATATGTTGT
cttttttgggtacatgctggtataatgttttacttgtacattttatctctatcagGTCAGTTTACATTGTATACACAGTACTTGGGGATGTCAGCATATATGTTGTGGGGAAGGAAGAGTATGATGAACTTGCTT
ttttatctct CT-rich tract
tataatgttttactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctcatctttatgagatgatgcaggttttcttttttcttttttccttttttgggtacatgctggtataatgttttacttgtacattttatctctatcagGTCAGTTTACATTGTATACACAGTACTTGGGGATGTCAGCATATATGTTGTGGGGAAGGAAGAGTATGATGAACTTGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - tgcaggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgtac