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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggatttttatgaaactgttagtagttatgtttagtagaaacttaaactgcgctgtattatgtattgttatatgataattatgagtgctttggttgtgaagGTTATTCCATGGGGAGACCTAGACTCGCTGGCAATGCTACAGAGGCAGCTTGATGTAGACATCCTTGTCACAGGTCACACCCATCAATTTACAGCTTACA

Basic information

species Glycine max
transcript GLYMA14G05340.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G05340.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv17s0000g05880.t01 (Vitis vinifera), 3'ss of exon 2
-ggatttttatgaaactgttagtagttatgtttagtagaaacttaaactgcgctgtattatgtattgttatatgataattatgagtgctttg--gttgtgaagGTTATTCCATGGGGAGACCTAGACTCGCTGGCAATGCTACAGAGGCAGCTTGATGTAGACATCCTTGTCACAGGTCACACCCATCAATTTACAGCTTACA
  |    |  ||      | |||  | | || |  |       | || | | |    ||   |    | | |    | || || |||  ||   ||| ||||||||||||||||||| ||| ||||||| || || ||||| ||||||||| | ||||||||||||||||| |||||||| ||||||| ||| ||||||||||
cagccagtcttgttctcataagtgatcaggtgttctct---tctgaatttctcatatttgattcaaatcacaattaagttctgcgtggcttattgttctgaagGTTATTCCATGGGGGGACTTAGACTCACTAGCCATGCTCCAGAGGCAGTTGGATGTAGACATCCTTGTGACAGGTCATACCCATCGATTCACAGCTTACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10238098|gb|BE806986.1|BE806986
EST:     AAACACTAACCATTGGCCAATTTAAGCTGGGACTATGCCATGGCCATCAG                         GTTATTCCATGGGGAGACCTAGACTCGCTGGCAATGCTACAGAGGCAGCTT
genomic: AAACACTAACCATTGGCCAATTTAAGCTGGGACTATGCCATGGCCATCAGgtctgatttt ... ggttgtgaagGTTATTCCATGGGGAGACCTAGACTCGCTGGCAATGCTACAGAGGCAGCTT
EST: gi|193706244|gb|FK645784.1|FK645784
EST:     AAACACTAACCATTGGCCAATTTAAGCTGGGACTATGCCATGGCCATCAG                         GTTATTCCATGGGGAGACCTAGACTCGCTGGCAATGCTACAGAGGCAGCTT
genomic: AAACACTAACCATTGGCCAATTTAAGCTGGGACTATGCCATGGCCATCAGgtctgatttt ... ggttgtgaagGTTATTCCATGGGGAGACCTAGACTCGCTGGCAATGCTACAGAGGCAGCTT
EST: gi|193596969|gb|FK549159.1|FK549159
EST:     GCTGGGACTATGCCATGGCCATCAG                         GTTATTCCATGGGGAGACCTAGACTCGCTAGCAATGCTACAGAGGCAGCTT
genomic: GCTGGGACTATGCCATGGCCATCAGgtctgatttt ... ggttgtgaagGTTATTCCATGGGGAGACCTAGACTCGCTGGCAATGCTACAGAGGCAGCTT
EST: gi|208120523|gb|GD918876.1|GD918876
EST:     AAACACTAACCATTGGCCAACTTAAGCTGGGACTATGCCATGGCCATCAG                         GTTATTCCATGGGGAGACCTAGACTCGCTGGCAATGCTACAGAGGCAGCTT
genomic: AAACACTAACCATTGGCCAATTTAAGCTGGGACTATGCCATGGCCATCAGgtctgatttt ... ggttgtgaagGTTATTCCATGGGGAGACCTAGACTCGCTGGCAATGCTACAGAGGCAGCTT
EST: gi|209726980|gb|BW680299.1|BW680299
EST:     AAACACTAACCATTGGCCAATTTAAGCTGGGACTATGCCATGGCCATCAG                         GTTATTCCATGGGGAGACCTAGACTCGCTGGCAATGCTACAGAGGCAGCTT
genomic: AAACACTAACCATTGGCCAATTTAAGCTGGGACTATGCCATGGCCATCAGgtctgatttt ... ggttgtgaagGTTATTCCATGGGGAGACCTAGACTCGCTGGCAATGCTACAGAGGCAGCTT
EST: gi|193381454|gb|FK347507.1|FK347507
EST:     GCTGGGACTATGCCATGGCCATCAG                         GTTATTCCATGGGGAGACCTAGACTCGCTGGCAATGCTACAGAGGCAGCTT
genomic: GCTGGGACTATGCCATGGCCATCAGgtctgatttt ... ggttgtgaagGTTATTCCATGGGGAGACCTAGACTCGCTGGCAATGCTACAGAGGCAGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgcgctgtattatgtattgttatatgataattatgagtgctttggttgtgaagGTTATTCCATGGGGAGACCTAGACTCGCTGGCAATGCTACAGAGGCAGCTTGATGTAGACATCCTTGTCACAGGTCACACCCATCAATTTACAGCTTACA
       tgtattatgtattgtt  TA-rich tract