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...tagaaagtttagctctgcttcattgtcttgctccatgcttttatttcctcttcctataatactattttcatttgactttggctgtctccacaaatggcagATCACTCACATGGAAATGATAAAAGGAATCAAGGGGCATGGCTATTATGATGAACTTGTTGTCCCCATAATTGAGAATACGGCCTACGAGTATCAGCTCA
species | Glycine max |
transcript | GLYMA13G35120.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TAGAGTCTTGTCTCGTAACAATGATCAATCCATTATCAAAGGAGTTTCGA ATCACTCACATGGAAATGATAAAAGGAATCAAGEST: gi|209713814|gb|BW684006.1|BW684006
genomic: TAGAGTCTTGTCTCGTAACAATGATCAATCCATTATCAAAGGAGTTTCGAgtaagtattt ... caaatggcagATCACTCACATGGAAATGATAAAAGGAATCAAG
EST: TAGAGTCTTGTCTCGTAACAATGATCAATCCATTATCAAAGGAGTTTCGA ATCACTCACATGGAAATGATAAAAGGAATCAAGGGGCATGGCTATTATGATEST: gi|209717225|gb|BW657694.1|BW657694
genomic: TAGAGTCTTGTCTCGTAACAATGATCAATCCATTATCAAAGGAGTTTCGAgtaagtattt ... caaatggcagATCACTCACATGGAAATGATAAAAGGAATCAAGGGGCATGGCTATTATGAT
EST: TAGAGTCTTGTCTCGTAACAATGATCAATCCATTATCAAAGGAGTTTCGA ATCACTCACATGGAAATGATAAAAGEST: gi|298191951|gb|HO036033.1|HO036033
genomic: TAGAGTCTTGTCTCGTAACAATGATCAATCCATTATCAAAGGAGTTTCGAgtaagtattt ... caaatggcagATCACTCACATGGAAATGATAAAAG
EST: TAGAGTCTTGTCTCGTAACAATGATCAATCCATTATCAAAGGAGTTTCGA ATCACTCACATGGAAATGEST: gi|298190687|gb|HO032808.1|HO032808
genomic: TAGAGTCTTGTCTCGTAACAATGATCAATCCATTATCAAAGGAGTTTCGAgtaagtattt ... caaatggcagATCACTCACATGGAAATG
EST: TAGAGTCTTGTCTCGTAACAATGATCAATCCATTATCAAAGGAGTTTCGA ATCACTCACATGGAAATGATAAAAGGAATCAAGGGGCATGGCTATTATGATEST: gi|209700267|gb|BW664493.1|BW664493
genomic: TAGAGTCTTGTCTCGTAACAATGATCAATCCATTATCAAAGGAGTTTCGAgtaagtattt ... caaatggcagATCACTCACATGGAAATGATAAAAGGAATCAAGGGGCATGGCTATTATGAT
EST: TAGAGTCTTGTCTCGTAACAATGATCAATCCATTATCAAAGGAGTTTCGA ATCACTCACATGGAAAT
genomic: TAGAGTCTTGTCTCGTAACAATGATCAATCCATTATCAAAGGAGTTTCGAgtaagtattt ... caaatggcagATCACTCACATGGAAAT
tcctcttcctataatactattttcatttgactttggctgtctccacaaatggcagATCACTCACATGGAAATGATAAAAGGAATCAAGGGGCATGGCTATTATGATGAACTTGTTGTCCCCATAATTGAGAATACGGCCTACGAGTATCAGCTCA
atttgac putative branch site (score: 4)
tctccac putative PPT
tataatactattttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagaaagtttagctctgcttcattgtcttgctccatgcttttatttcctcttcctataatactattttcatttgactttggctgtctccacaaatggcagATCACTCACATGGAAATGATAAAAGGAATCAAGGGGCATGGCTATTATGATGAACTTGTTGTCCCCATAATTGAGAATACGGCCTACGAGTATCAGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA