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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgcatgatgttatgttatcggttgtgattttgtatgtcttcctttagagaaatgattattgacatctgttatgaatacacagGTGAAGATTTTTGGGGTTGAGCCCACTGATGCAAATGCAATGGCGTTGTCACTCCACCATGACCAGAGAGTGATTTTGGACCAGGTTGGGGGATTTGCAG

Basic information

species Glycine max
transcript GLYMA13G21230.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G21230.1 (Glycine max), 3'ss of exon 3
lower sequence: AT3G10050.1 (Arabidopsis thaliana), 3'ss of exon 3
-------------------------------------------------------------gtttgcatgatgttatgttatcggttgtgattttgta-tgtcttcctttagagaaatgattattgacatctgttatgaat-acacagGTGAAGATTTTTGGGGTTGAGCCCACTGATGCAAATGCAATGGCGTTGTCACTCCACCATGACCAGAGAGTGATTTTGGACCAGGTTGGGGGATTTGCAG
                                                                | | ||     |  |      || | |||  | | ||  |||||| ||     || || ||    |   || ||  | |  |||||||||||  |||| || || ||  |||| |||||||||||||| ||||| || || || |   |||| ||||| |||||||||||||||||||||||||
gtactctttttgctgtgactgctttggcaatgtcaccttctgttctgttgttgttaataacagctacttgtgacaaaatccagaattttaattaagaaatgagttccttcagcttc-tgtttcttattgtgacttttgggttatgcagGTGAAGATCATTGGTGTAGAACCAGCTGACGCAAATGCAATGGCTTTGTCGCTGCATCACGGTGAGAGGGTGATATTGGACCAGGTTGGGGGATTTGCAG

upper sequence: GLYMA13G21230.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv08s0007g04310.t01 (Vitis vinifera), 3'ss of exon 3
-----------------gtttgcatgatgttatgttatcggttgtgattttg----tatgtcttcctttagagaaatgattattgacatctgttatgaatacacagGTGAAGATTTTTGGGGTTGAGCCCACTGATGCAAATGCAATGGCGTTGTCACTCCACCATGACCAGAGAGTGATTTTGGACCAGGTTGGGGGATTTGCAG
                  ||   || |||| || |    |  || |  |        |  | || | ||| |   |  | |  | | |||| || |      |||||| |||||| ||||||| ||||||  |||||||||||||||||| |||||  | || || || |||||||| ||  | |||||||| || || ||||| |
agtgtttggttaacctatttcttattatgtcatataggagagtgaggctggaacaccaactatttcattacaagcactaatcataatatcttttgt------acagGTAAAGATTATTGGGGTGGAGCCCTGTGATGCAAATGCAATGGCATTGTCGTTACATCACGATCAGAGAGTCATGCTAGACCAGGTGGGAGGTTTTGCGG

upper sequence: GLYMA13G21230.1 (Glycine max), 3'ss of exon 3
lower sequence: PP1S370_61V6.1 (Physcomitrella patens), 3'ss of exon 3
----------gtttgcatgatgttatgttatcggtt---gtg-attttgtatgtcttcctttagagaa-atgattattgacatctgttatgaatacacagGTGAAGATTTTTGGGGTTGAGCCCACTGATGCAAATGCAATGGCGTTGTCACTCCACCATGACCAGAGAGTGATTTTGGACCAGGTTGGGGGATTTGCAG
           |||   |||     | || |   |    ||| | |||  |  | || |||| ||||   | | | |||       ||||   | |||||||||||||| |||| || |||||  ||||||| ||||||||||| ||||||||  ||||||   |  | ||  |  |||| || |||||||| ||||| |
tataatagctctttaggtgaatcagttttgtttatctaagtgtagtttaaagattttgctttcgagagtgtcacttttgtgcataattattgtttcacagGTGAAGATTATTGGTGTGGAGCCTGCTGATGCCAATGCAATGGCTTTGTCACTTTACCATGGTAAACGTGTTGTCCTGGATCAAGTTGGGGGCTTTGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgtatgtcttcctttagagaaatgattattgacatctgttatgaatacacagGTGAAGATTTTTGGGGTTGAGCCCACTGATGCAAATGCAATGGCGTTGTCACTCCACCATGACCAGAGAGTGATTTTGGACCAGGTTGGGGGATTTGCAG
                             tattgac  putative branch site (score: 2)
                      aaatgattatt  TA-rich tract