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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatcaattgatgattcaatgctgaatgtgactacatattatatgaagaatgaatttatcaattctattatgaatttatcaattttattctccaattttattaatctgttgtagcattttttactcaccagATGTTTAGATCCATTAATCATAACAAGGATTTTGAAGTTTCACTTGCTTATGAAAGTGAGAATCATTTGCCTCCTGGTGTTACCTCTCCTGAAATTGCTC

Basic information

species Glycine max
transcript GLYMA13G10700.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298191463|gb|HO038942.1|HO038942
EST:     AAAGCTCTAGGCAGCTACTTGTGCCACGAATGAAGAAGGTCCCGAGTAAG                         ATGTTTAGATCCATTAATCATAACAAGGATTTTGAAGTTTCACTTGCTTAT
genomic: AAAGCTCTAGGCAGCTACTTGTGCCACGAATGAAGAAGGTCCCGAGTAAGgtaaatcaat ... tactcaccagATGTTTAGATCCATTAATCATAACAAGGATTTTGAAGTTTCACTTGCTTAT
EST: gi|6481446|gb|AW200717.1|AW200717
EST:     AAAGCTCTAGGCAGCTACTTGTGCCACGAATGAAGAAGGTCCCGAGTAAG                         ATGTTTAGATCCATTAATCATAACA
genomic: AAAGCTCTAGGCAGCTACTTGTGCCACGAATGAAGAAGGTCCCGAGTAAGgtaaatcaat ... tactcaccagATGTTTAGATCCATTAATCATAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcaattttattctccaattttattaatctgttgtagcattttttactcaccagATGTTTAGATCCATTAATCATAACAAGGATTTTGAAGTTTCACTTGCTTATGAAAGTGAGAATCATTTGCCTCCTGGTGTTACCTCTCCTGAAATTGCTC
                      tattaat  putative branch site (score: 2)
                                        ttttttactc  putative PPT
     attttattctccaatt  TA-rich tract