Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggtgttttcgctgatttaaaaataagtttaatttttgcattttcttgaaatgggattgtaatttcgataccttgttattttttttttttcccattttcagGCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCTCGGAACACCATCGTAGAAGTTGAAAAAGTATTTGAAACAACAGAAGATT

Basic information

species Glycine max
transcript GLYMA12G34820.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9564281|gb|BE473790.1|BE473790
EST:     ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTG                         GCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
genomic: ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTGgtactgtttc ... ccattttcagGCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
EST: gi|15287556|gb|BI471447.1|BI471447
EST:     ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTG                         GCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
genomic: ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTGgtactgtttc ... ccattttcagGCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
EST: gi|7042468|gb|AW472362.1|AW472362
EST:     ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTG                         GCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
genomic: ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTGgtactgtttc ... ccattttcagGCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
EST: gi|192327965|gb|FK023826.1|FK023826
EST:     ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTG                         GCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
genomic: ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTGgtactgtttc ... ccattttcagGCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
EST: gi|7285517|gb|AW598004.1|AW598004
EST:     ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTG                         GCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
genomic: ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTGgtactgtttc ... ccattttcagGCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
EST: gi|31475472|gb|CD417500.1|CD417500
EST:     ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTG                         GCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
genomic: ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTGgtactgtttc ... ccattttcagGCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
EST: gi|192304981|gb|FG996113.1|FG996113
EST:     ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTG                         GCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
genomic: ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTGgtactgtttc ... ccattttcagGCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
EST: gi|213603291|gb|DB981948.1|DB981948
EST:     ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTG                         GCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
genomic: ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTGgtactgtttc ... ccattttcagGCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
EST: gi|10238770|gb|BE807658.1|BE807658
EST:     ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTG                         GCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
genomic: ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTGgtactgtttc ... ccattttcagGCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
EST: gi|192333924|gb|FK024737.1|FK024737
EST:     ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTG                         GCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
genomic: ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTGgtactgtttc ... ccattttcagGCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
EST: gi|33387458|gb|CA850665.1|CA850665
EST:     ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTG                         GCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
genomic: ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTGgtactgtttc ... ccattttcagGCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
EST: gi|21286136|gb|BQ474007.1|BQ474007
EST:     ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTG                         GCTGAGTTGGAGGAGTCGGATAAGAAGGCCAGTCCTGAGATTGATGAAGCT
genomic: ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTGgtactgtttc ... ccattttcagGCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
EST: gi|254336864|gb|GR843043.1|GR843043
EST:     ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTG                         GCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
genomic: ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTGgtactgtttc ... ccattttcagGCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
EST: gi|13791202|gb|BG653793.1|BG653793
EST:     ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTG                         GCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
genomic: ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTGgtactgtttc ... ccattttcagGCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
EST: gi|192332178|gb|FK023827.1|FK023827
EST:     ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTG                         GCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
genomic: ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTGgtactgtttc ... ccattttcagGCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
EST: gi|151406447|gb|EV276262.1|EV276262
EST:     ACTGCCGCAAGCGCCTTGAGGCCACTTTGGCAGACTTGAAAGGATTATTG                         GCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
genomic: ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTGgtactgtttc ... ccattttcagGCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
EST: gi|193483711|gb|FK452842.1|FK452842
EST:     CTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTG                         GCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTG
genomic: CTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTGgtactgtttc ... ccattttcagGCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTG
EST: gi|10255581|gb|BE823347.1|BE823347
EST:     ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTG                         GCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
genomic: ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTGgtactgtttc ... ccattttcagGCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
EST: gi|192333115|gb|FK026444.1|FK026444
EST:     ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTG                         GCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
genomic: ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTGgtactgtttc ... ccattttcagGCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaaatgggattgtaatttcgataccttgttattttttttttttcccattttcagGCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCTCGGAACACCATCGTAGAAGTTGAAAAAGTATTTGAAACAACAGAAGATT
                      taccttgttatttttt  CT-rich tract
                     ataccttgttattttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ggtgttttcgctgatttaaaaataagtttaatttttgcattttcttgaaatgggattgtaatttcgataccttgttattttttttttttcccattttcagGCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCTCGGAACACCATCGTAGAAGTTGAAAAAGTATTTGAAACAACAGAAGATT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT