1 5' 3' | 2 5' 3' | 3 5' 3' |
...tcctagttactaccctgtaatttttctttgccacactaatattttactgtataaacaacttacctctgcttgcaatctttaatgtttgcaattctaacagGATTTTGTGGAGAAACAGAGGAGGAGCATTCTGAGACGTTAACTCTAGTAAAAGCTGTTGGTTATGATATGGCATTCATGTTTGCGTATAGCATGAGGGA
species | Glycine max |
transcript | GLYMA11G07790.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AATACGGAGTATTATTCCAGACGTGGCTTTGAGCAGTGATTTCATTTGTG GATTTTGTGGAGAAACAGAGGAGGAGCATTCTGAGACGTTAACTCTAGTAA
genomic: AATACGGAGTATTATTCCAGACGTGGCTTTGAGCAGTGATTTCATTTGTGgtaatatgtt ... attctaacagGATTTTGTGGAGAAACAGAGGAGGAGCATTCTGAGACGTTAACTCTAGTAA
actgtataaacaacttacctctgcttgcaatctttaatgtttgcaattctaacagGATTTTGTGGAGAAACAGAGGAGGAGCATTCTGAGACGTTAACTCTAGTAAAAGCTGTTGGTTATGATATGGCATTCATGTTTGCGTATAGCATGAGGGA
aatctttaatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcctagttactaccctgtaatttttctttgccacactaatattttactgtataaacaacttacctctgcttgcaatctttaatgtttgcaattctaacagGATTTTGTGGAGAAACAGAGGAGGAGCATTCTGAGACGTTAACTCTAGTAAAAGCTGTTGGTTATGATATGGCATTCATGTTTGCGTATAGCATGAGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - -ctaccct
- - - - - - - - - - - - - - - ccacact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgc