1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttctcataggatggcacttgttaagataactgcataaatcacaatcaacgcatcaaatcatatttactattattaatttctagtggtttaatgacgacagAGCAAATTGGAGTTCCAGTTGAGACTTCAAGAGTTCATAGAATTAGTAAGAGCTGAGAACAATTTGAGAGCTATCACATATGCTAGGAAATATCTTGCGC
species | Glycine max |
transcript | GLYMA10G43910.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGCCCTAGCATGGTGTGCTGATAACAAATCAAGGCTGAAGAAGTCTAAG AGCAAATTGGAGTTCCAGTTGAGACTTCAAGAGTTCATAGAATTAGTAAGAEST: gi|192319197|gb|FK006925.1|FK006925
genomic: CTGCCCTAGCATGGTGTGCTGATAACAAATCAAGGCTGAAGAAGTCTAAGgttcatactg ... atgacgacagAGCAAATTGGAGTTCCAGTTGAGACTTCAAGAGTTCATAGAATTAGTAAGA
EST: CTGCCCTAGCATGGTGTGCTGATAACAAATCAAGGCTGAAGAAGTCTAAG AGCAAATTGGAGTTCCAGTTGAGACTTCAAGAGTTCATAGAATTAGTAAGAEST: gi|14259206|gb|BG882114.1|BG882114
genomic: CTGCCCTAGCATGGTGTGCTGATAACAAATCAAGGCTGAAGAAGTCTAAGgttcatactg ... atgacgacagAGCAAATTGGAGTTCCAGTTGAGACTTCAAGAGTTCATAGAATTAGTAAGA
EST: CTGCCCTAGCATGGTGTGCTGATAACAAATCAAGGCTGAAGAAGTCTAAG AGCAAATTGGAGTTCCAGTTGAGACTTCAAGAGTTCATAGAATTAGTAAGA
genomic: CTGCCCTAGCATGGTGTGCTGATAACAAATCAAGGCTGAAGAAGTCTAAGgttcatactg ... atgacgacagAGCAAATTGGAGTTCCAGTTGAGACTTCAAGAGTTCATAGAATTAGTAAGA
caacgcatcaaatcatatttactattattaatttctagtggtttaatgacgacagAGCAAATTGGAGTTCCAGTTGAGACTTCAAGAGTTCATAGAATTAGTAAGAGCTGAGAACAATTTGAGAGCTATCACATATGCTAGGAAATATCTTGCGC
atcaaatcatatttac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctcataggatggcacttgttaagataactgcataaatcacaatcaacgcatcaaatcatatttactattattaatttctagtggtttaatgacgacagAGCAAATTGGAGTTCCAGTTGAGACTTCAAGAGTTCATAGAATTAGTAAGAGCTGAGAACAATTTGAGAGCTATCACATATGCTAGGAAATATCTTGCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - cacttgt
- - - - - - - - - - - - - - - tgcataa
- - - - - - - - - - - - - - - - - - - - - - -caacgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agtggtt