1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tttcaagctccctggagttaagctttcattcttatttgactgattttgaagaacttgcatattttattaattgtttcgtcctcttccttttttcttgcagGGTATTTATGGTTATCCAATAGAGATTCAAGCACTTTTCTTCATGGCATTGAGATGTGCTTTGTCAATGCTGAAACAGGATGACGCCGAAGGGAAGGAAT
species | Glycine max |
transcript | GLYMA10G35890.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCCAACTTTGCTTTGTGCTGATGGATGTTGCATGGTTGATCGAAGAATG GGTATTTATGGTTATCCAATAGAGATTCAAGCACTTTTCTTCATGGCATTGEST: gi|192308757|gb|FG999782.1|FG999782
genomic: TTCCAACTTTGCTTTGTGCTGATGGATGTTGCATGGTTGATCGAAGAATGgtaagacata ... tttcttgcagGGTATTTATGGTTATCCAATAGAGATTCAAGCACTTTTCTTCATGGCATTG
EST: TTCCAACTTTGCTTTGTGCTGATGGATGTTGCATGGTTGATCGAAGAATG GGTATTTATGGTTATCCAATAGAGATTCAAGCACTTTTCTTCATGGCATTGEST: gi|193359645|gb|FK323729.1|FK323729
genomic: TTCCAACTTTGCTTTGTGCTGATGGATGTTGCATGGTTGATCGAAGAATGgtaagacata ... tttcttgcagGGTATTTATGGTTATCCAATAGAGATTCAAGCACTTTTCTTCATGGCATTG
EST: TTCCAACTTTGCTTTGTGCTGATGGATGTTGCATGGTTGATCGAAGAATG GGTATTTATGGTTATCCAATAGAGATTCAAGCACTTTTTCTTCATGGCATT
genomic: TTCCAACTTTGCTTTGTGCTGATGGATGTTGCATGGTTGATCGAAGAATGgtaagacata ... tttcttgcagGGTATTTATGGTTATCCAATAGAGATTCAAGCACTTTT-CTTCATGGCATT
ttgaagaacttgcatattttattaattgtttcgtcctcttccttttttcttgcagGGTATTTATGGTTATCCAATAGAGATTCAAGCACTTTTCTTCATGGCATTGAGATGTGCTTTGTCAATGCTGAAACAGGATGACGCCGAAGGGAAGGAAT
tattaat putative branch site (score: 2)
ttttattaattgtttc CT-rich tract
ttgcatattttattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcaagctccctggagttaagctttcattcttatttgactgattttgaagaacttgcatattttattaattgtttcgtcctcttccttttttcttgcagGGTATTTATGGTTATCCAATAGAGATTCAAGCACTTTTCTTCATGGCATTGAGATGTGCTTTGTCAATGCTGAAACAGGATGACGCCGAAGGGAAGGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA