1 5' 3' | 2 5' 3' | 3 5' 3' |
gtagctctctttcctatgctcattttaactatttttttattttacttaaagtaaaatggagaattttcagGTGGCTCCATATAAGAAAGTGAGAAAGGTGAGTTTCATTGACACTATTCCAAAGTCAGCTGCTGGCAAGATATTGCGGAAGGATCTTGTTTCTCAAAGCA
species | Glycine max |
transcript | GLYMA10G34160.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGGTTCTGAACTCTCAGAAAACCAAGTCATTCAATTTGTTGCAGGCCAG GTGGCTCCATATAAGAAAGTGAGAAAGGTGAGTTTCATTGACACTATTCCAEST: gi|17964740|gb|BM271470.1|BM271470
genomic: CTGGTTCTGAACTCTCAGAAAACCAAGTCATTCAATTTGTTGCAGGCCAGgtagctctct ... gaattttcagGTGGCTCCATATAAGAAAGTGAGAAAGGTGAGTTTCATTGACACTATTCCA
EST: CTGGTTCTGAACTCTCAGAAAACCAAGTCATTCAATTTGTTGCAGGCCAG GTGGCTCCATATAAGAAAGTGAGAAAGGTGAGTTTCATTGACACTATTCCA
genomic: CTGGTTCTGAACTCTCAGAAAACCAAGTCATTCAATTTGTTGCAGGCCAGgtagctctct ... gaattttcagGTGGCTCCATATAAGAAAGTGAGAAAGGTGAGTTTCATTGACACTATTCCA
atgctcattttaactatttttttattttacttaaagtaaaatggagaattttcagGTGGCTCCATATAAGAAAGTGAGAAAGGTGAGTTTCATTGACACTATTCCAAAGTCAGCTGCTGGCAAGATATTGCGGAAGGATCTTGTTTCTCAAAGCA
ttttaac putative branch site (score: 2)
ttttc putative PPT
attttaactatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagctctctttcctatgctcattttaactatttttttattttacttaaagtaaaatggagaattttcagGTGGCTCCATATAAGAAAGTGAGAAAGGTGAGTTTCATTGACACTATTCCAAAGTCAGCTGCTGGCAAGATATTGCGGAAGGATCTTGTTTCTCAAAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA