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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataaatgctttgtggaatcatccgtgttgctagtttgggaattggttttatatatatatatatgaaagttaacatttgccattggaattttgacagGAGAGCTATTATGACAGGGAGGGCAGTAAGGGTGAATTCACAGTTGAAATCTCACAAAAGATTTGCTAATGCATTTCCAAGATTTTGCAAACTTGTTGAT

Basic information

species Glycine max
transcript GLYMA10G32900.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G32900.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv05s0020g04850.t01 (Vitis vinifera), 3'ss of exon 7
---------------------------------------------------------------gtat-aaatgctttgtggaatcatccgtgttgctagtttgggaa-ttggttttatatatatatatatgaaagttaaca---tttgccattggaattttga--cagGAGAGCTATTATGACAGGGAGGGCAGTAAGGGTGAATTCACAGTTGAAATCTCACAAAAGATTTGCTAATGCATTTCCAAGATTTTGCAAACTTGTTGAT
                                                                 || ||||      |       |  | | ||||| |  || || ||    |  | |  | ||   | |||  | |||   |     |||  |   ||||  |||||||||||| ||||||    | ||||| |||||||| |||||||||||||| ||||| |||||||| | ||| ||||  ||||  ||| |||||||||||
gtaaaattttgtatgaacttcaacatttttatgttaagaggaacaggattgtctggatgagatacattaaatatgccatttttcagtttgagatgctactaaggcaacttaagctagtgtgcaaatcattcaaaactgacagggtcatatattttatacttgaaacagGAGAGCTATAATGACAAAACGAGCAGTGAGGGTGAACTCACAGTTGAAATCCCACAAGAGATTTGCAAGTGCGTTTCAGAGATACTGCCAACTTGTTGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5677029|gb|AI938159.1|AI938159
EST:     CTAGTTGGTGTGGTTTGTGATGGCTATCTTGCTGTTGTTAGAGGCATTAG                         GAGAGCTATTATGACAGGGAGGGCAGTAAGGGTGAATTCACAGTTGAAATC
genomic: CTAGTTGGTGTGGTTTGTGATGGCTATCTTGCTGTTGTTAGAGGCATTAGgtataaatgc ... attttgacagGAGAGCTATTATGACAGGGAGGGCAGTAAGGGTGAATTCACAGTTGAAATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggttttatatatatatatatgaaagttaacatttgccattggaattttgacagGAGAGCTATTATGACAGGGAGGGCAGTAAGGGTGAATTCACAGTTGAAATCTCACAAAAGATTTGCTAATGCATTTCCAAGATTTTGCAAACTTGTTGAT
                         agttaac  putative branch site (score: 3)
     tttatatatatatata  TA-rich tract