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gcatgtttttcactgaattgaaagcttttatagttttgactttaccaaatgggtaaattggtagtcattttatattttggtaacctttcggatttaataagtttgtgttttgttgttttgtcatacagGTGGAAGGGAGAAGGCTCCTGCTGCTTTTTGTCGTAAAGTAATCACTTCCACTGATAGATTTGAGATGTGGGGAGATGGATTGCAAACACGATCATTTAC
species | Glycine max |
transcript | GLYMA10G30400.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCGCATTGGGAGGTTCCACAACATATACGGTCCTTTTGGGACATGGAAAG GTGGAAGGGAGAAGGCTCCTGCTGCTTTTTGTCGTAAAGTAATCACTTCCAEST: gi|13311333|gb|BG404984.1|BG404984
genomic: CCGCATTGGGAGGTTCCACAACATATACGGTCCTTTTGGGACATGGAAAGgcatgttttt ... tgtcatacagGTGGAAGGGAGAAGGCTCCTGCTGCTTTTTGTCGTAAAGTAATCACTTCCA
EST: GGTCCTTTTGGGACATGGAAAT GTGGAAGGGAGAATGCTCCTGCTGCTTTTTGTCGTAAAGTAATCACTTCCAEST: gi|151403142|gb|EV272952.1|EV272952
genomic: GGTCCTTTTGGGACATGGAAAGgcatgttttt ... tgtcatacagGTGGAAGGGAGAAGGCTCCTGCTGCTTTTTGTCGTAAAGTAATCACTTCCA
EST: CCGCATTGGGAGGTTCCACAACATATACGGTCCTTTTGGGACATGGAAAG GTGGAAAGGGAGAAAGCTCCTGCTGCTTTTTGTCGTAAAGTAATCACTTCCEST: gi|20813404|gb|BQ297882.1|BQ297882
genomic: CCGCATTGGGAGGTTCCACAACATATACGGTCCTTTTGGGACATGGAAAGgcatgttttt ... tgtcatacagGTGGAA-GGGAGAAGGCTCCTGCTGCTTTTTGTCGTAAAGTAATCACTTCC
EST: CCGCATTGGGAGGTTCCACAACATATACGGTCCTTTTGGGACATGGAAAG GTGGAAGGGAGAAGGCTCCTGCTGCTTTTTGTCGTAAAGTAATCACTTCCAEST: gi|7587929|gb|AW703735.1|AW703735
genomic: CCGCATTGGGAGGTTCCACAACATATACGGTCCTTTTGGGACATGGAAAGgcatgttttt ... tgtcatacagGTGGAAGGGAGAAGGCTCCTGCTGCTTTTTGTCGTAAAGTAATCACTTCCA
EST: CCGCATTGGGAGGTTCCACAACATATACGGTCCTTTTGGGACATGGAAAG GTGGAAGGGAGAAGGCTCCTGCTGCTTTTTGTCGTAAAGTAATCACTTCCAEST: gi|6502418|gb|AW203791.1|AW203791
genomic: CCGCATTGGGAGGTTCCACAACATATACGGTCCTTTTGGGACATGGAAAGgcatgttttt ... tgtcatacagGTGGAAGGGAGAAGGCTCCTGCTGCTTTTTGTCGTAAAGTAATCACTTCCA
EST: CCGCATTGGGAGGTTCCACAACATATACGGTCCTTTTGGGACATGGAAAG GTGGAAGGGAGAAGGCTCCTGCTGCTTTTTGTCGTAAAGTAATCACTTCCA
genomic: CCGCATTGGGAGGTTCCACAACATATACGGTCCTTTTGGGACATGGAAAGgcatgttttt ... tgtcatacagGTGGAAGGGAGAAGGCTCCTGCTGCTTTTTGTCGTAAAGTAATCACTTCCA
attttggtaacctttcggatttaataagtttgtgttttgttgttttgtcatacagGTGGAAGGGAGAAGGCTCCTGCTGCTTTTTGTCGTAAAGTAATCACTTCCACTGATAGATTTGAGATGTGGGGAGATGGATTGCAAACACGATCATTTAC
ttgtttt CT-rich tract
atttaataagtttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatgtttttcactgaattgaaagcttttatagttttgactttaccaaatgggtaaattggtagtcattttatattttggtaacctttcggatttaataagtttgtgttttgttgttttgtcatacagGTGGAAGGGAGAAGGCTCCTGCTGCTTTTTGTCGTAAAGTAATCACTTCCACTGATAGATTTGAGATGTGGGGAGATGGATTGCAAACACGATCATTTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA