Sequence
atgc intronic sequence ATGC exonic sequence...attggattttcaattaacatgatttcctcacaaggggaaggggggaggtgccattacaagcaaatatcataagctaaatattcttcttggttatttgcagATTCATATGTTTGGTGGAACTGGGAAAGGTGGGAAAAAGAGTTAGACTGGATGGCACTTCAGGGGGTGAATCTTCCCTTGGCATTTACTGGGCAGGAAGC
Basic information
| species | Glycine max |
| transcript | GLYMA10G11720.1 |
| intron # | 3 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G11720.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv13s0064g00370.t01 (Vitis vinifera), 3'ss of exon 3
-----at-tggattttcaattaacatgatttcctcacaagggg-aaggggggaggtgccattacaagcaaatatcataagctaaatattcttcttggttatttgcagATTCATATGTTTGGTGGAACTGGGAAAGGTGGGAAAAAGAGTTAGACTGGATGGCACTTCAGGGGGTGAATCTTCCCTTGGCATTTACTGGGCAGGAAGC
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aacctatataaaatatcctttgatcttttatacatgcatttgataatgccactgatactgttgtaataacttcatataattttagcattcttctt-------tgcagATTCTTATGTTTGGTGGGATTGGGAAAGATGGGAGAAAGAGATAGACTGGATGGCTCTACAAGGAGTTAACTTGCCTTTGGCATTTAATGGGCAAGAAGC
upper sequence: GLYMA10G11720.1 (Glycine max), 3'ss of exon 3
lower sequence: PP1S329_23V6.1 (Physcomitrella patens), 3'ss of exon 3
attggattttcaattaacatgatttcctcacaaggggaaggggggaggtgccattacaagcaa---atatcataagctaaatattcttcttggttatttgcagATTCATATGTTTGGTGGAACTGGGAAAGGTGGGAAAAAGAGTTAGACTGGATGGCACTTCAGGGGGTGAATCTTCCCTTGGCATTTACTGGGCAGGAAGC
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-ttacagtgt-actcaattttatatgtgaaaatgagaagaccgaacaatgttgccttaaattatgtgcctcagaatctgactctttaaccttcttact-gtagATTCATATGTGTGGTGGACCTGGGAGCGATGGGAAAAAGAAATAGATTGGATGGCATTGCAAGGTATCAATTTGCCTCTTGCATTCACAGGGCAAGAGGC
upper sequence: GLYMA10G11720.1 (Glycine max), 3'ss of exon 3
lower sequence: EFJ23779 (Selaginella moellendorffii), 3'ss of exon 3
attggattttcaattaacatgatttcctcacaaggggaaggggggaggtgccattacaagca-aatatca--taagctaaat--attcttcttggttatttgc--agATTCATATGTTTGGTGGAACTGGGAAAGGTGGGAAAAAGAGTTAGACTGGATGGCACTTCAGGGGGTGAATCTTCCCTTGGCATTTACTGGGCAGGAAGC
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-------------------------------------------gtatgtgcttgtaaagctatggttttacttgaacttaaccgattcttcatggttttttgtgtagATTCGTATGCATGGTGGAACTGGAAAAGGTGGAGGAAAGAGATAGACTGGATGGCCTTGCAGGGAATCAACTTACCTCTTGCATTCACCGGCCAGGAAAC
upper sequence: GLYMA10G11720.1 (Glycine max), 3'ss of exon 3
lower sequence: EFJ21415 (Selaginella moellendorffii), 3'ss of exon 3
attggattttcaattaacatgatttcctcacaaggggaaggggggaggtgccattacaagcaaatat---cataagctaaat--attcttcttggttatttgc--agATTCATATGTTTGGTGGAACTGGGAAAGGTGGGAAAAAGAGTTAGACTGGATGGCACTTCAGGGGGTGAATCTTCCCTTGGCATTTACTGGGCAGGAAGC
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-------------------------------------------gtatgtgcttgtaaagctatggttttacgtgaacttaaccgattcttcatggttttttgtgtagATTCGTATGCATGGTGGAACTGGAAAAGGTGGAGGAAAGAGATAGACTGGATGGCCTTGCAGGGAATCAACTTACCTCTTGCATTCACCGGCCAGGAAACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209718689|gb|BW674779.1|BW674779EST: TAAACGCCCTGTTCCATGGAATTATTACCAAAATGTTGTTACCTCTAGTT ATTCATATGTTTGGTGGAACTGGGAAAGGTG
genomic: TAAACGCCCTGTTCCATGGAATTATTACCAAAATGTTGTTACCTCTAGTTgtgagtatca ... ttatttgcagATTCATATGTTTGGTGGAACTGGGAAAGGTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aggtgccattacaagcaaatatcataagctaaatattcttcttggttatttgcagATTCATATGTTTGGTGGAACTGGGAAAGGTGGGAAAAAGAGTTAGACTGGATGGCACTTCAGGGGGTGAATCTTCCCTTGGCATTTACTGGGCAGGAAGC
agctaaa putative branch site (score: 3)
aaatatcataagctaa TA-rich tract
