1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gttctttaactattttttcttgtcttctatgtgccttgagtgacaaatacattttatgcatctttaatttttttaattttttttttcgtttatgtaccagCCATCCTCCCTAGCAGCACTTCGAGAATGGGTATCCCACACTGATATTCAGAACTTTGAGATATTGCTGTGTATTGGAAACAAAGTGGACCTGGTTACTG
species | Glycine max |
transcript | GLYMA09G32900.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCGTATTTCGACGAATGACTGCGCTGGTGATGGTTTTTGACATGAATGAA CCATCCTCCCTAGCAGCACTTCGAGAATGGGTATCCCACACTGATATTCAGEST: gi|298192872|gb|HO033306.1|HO033306
genomic: CCGTATTTCGACGAATGACTGCGCTGGTGATGGTTTTTGACATGAATGAAgttagttcct ... tatgtaccagCCATCCTCCCTAGCAGCACTTCGAGAATGGGTATCCCACACTGATATTCAG
EST: CCGTGTTTCGACGAATGACTGCGCTGGTGATGGTTTTTGACATGAATGAA CCATCCCCCCTAGCAGCACTTCGAGAATGGGTATCCCACACTGATATTCAGEST: gi|298196622|gb|HO041365.1|HO041365
genomic: CCGTATTTCGACGAATGACTGCGCTGGTGATGGTTTTTGACATGAATGAAgttagttcct ... tatgtaccagCCATCCTCCCTAGCAGCACTTCGAGAATGGGTATCCCACACTGATATTCAG
EST: CCGTGTTTCGACGAATGACTGCGCTGGTGATGGTTTTTGACATGAATGAA CCATCCTCCCTAGCAGCACTTCGAGAATGGGTATCCCACACTGATATTCAGEST: gi|298199456|gb|HO042819.1|HO042819
genomic: CCGTATTTCGACGAATGACTGCGCTGGTGATGGTTTTTGACATGAATGAAgttagttcct ... tatgtaccagCCATCCTCCCTAGCAGCACTTCGAGAATGGGTATCCCACACTGATATTCAG
EST: CCGTGTTTCGACGAATGACTGCGCTGGTGATGGTTTTTGACATGAATGAA CCATCCTCCCTAGCAGCACTTCGAGAATGGGTATCCCACACTGATATTCAGEST: gi|298173828|gb|HO017164.1|HO017164
genomic: CCGTATTTCGACGAATGACTGCGCTGGTGATGGTTTTTGACATGAATGAAgttagttcct ... tatgtaccagCCATCCTCCCTAGCAGCACTTCGAGAATGGGTATCCCACACTGATATTCAG
EST: CCGTGTTTCGACGAATGACTGCGCTGGTGATGGTTTTTGACATGAATGAA CCATCCTCCCTAGCAGCACTTCGAGAATGGGTATCCCACACTGATATTCAGEST: gi|298188665|gb|HO035358.1|HO035358
genomic: CCGTATTTCGACGAATGACTGCGCTGGTGATGGTTTTTGACATGAATGAAgttagttcct ... tatgtaccagCCATCCTCCCTAGCAGCACTTCGAGAATGGGTATCCCACACTGATATTCAG
EST: CCGTGTTTCGACGAATGACTGCGCTGGTGATGGTTTTTGACATGAATGAA CCATCCTCCCTAGCAGCACTTCGAGAATGGGTATCCCACACTGATATTCAGEST: gi|207766568|gb|GD738784.1|GD738784
genomic: CCGTATTTCGACGAATGACTGCGCTGGTGATGGTTTTTGACATGAATGAAgttagttcct ... tatgtaccagCCATCCTCCCTAGCAGCACTTCGAGAATGGGTATCCCACACTGATATTCAG
EST: CCGTGTTTCGACGAATGACTGCGCTGGTGATGGTTTTTGACATGAATGAA CCATCCTCCCTAGCAGCACTTCGAGAATGGGTATCCCACACTGATATTCAGEST: gi|298185141|gb|HO030354.1|HO030354
genomic: CCGTATTTCGACGAATGACTGCGCTGGTGATGGTTTTTGACATGAATGAAgttagttcct ... tatgtaccagCCATCCTCCCTAGCAGCACTTCGAGAATGGGTATCCCACACTGATATTCAG
EST: CCGTGTTTCGACGAATGACTGCGCTGGTGATGGTTTTTGACATGAATGAA CCATCCTCCCTAGCAGCACTTCGAGAATGGGTATCCCACACTGATATTCAGEST: gi|151395592|gb|EV265469.1|EV265469
genomic: CCGTATTTCGACGAATGACTGCGCTGGTGATGGTTTTTGACATGAATGAAgttagttcct ... tatgtaccagCCATCCTCCCTAGCAGCACTTCGAGAATGGGTATCCCACACTGATATTCAG
EST: CCGTATTTCGACGAATGACTGCGCTGGTGATGGTTTTTGACATGAATGAA CCATCCTCCCTAGCAGCACCTCGAGAATGGGTATCCCACACTGATATTCAG
genomic: CCGTATTTCGACGAATGACTGCGCTGGTGATGGTTTTTGACATGAATGAAgttagttcct ... tatgtaccagCCATCCTCCCTAGCAGCACTTCGAGAATGGGTATCCCACACTGATATTCAG
aatacattttatgcatctttaatttttttaattttttttttcgtttatgtaccagCCATCCTCCCTAGCAGCACTTCGAGAATGGGTATCCCACACTGATATTCAGAACTTTGAGATATTGCTGTGTATTGGAAACAAAGTGGACCTGGTTACTG
ttttaat putative branch site (score: 3)
tttttttaattttttt CT-rich tract
attttatgcatcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctttaactattttttcttgtcttctatgtgccttgagtgacaaatacattttatgcatctttaatttttttaattttttttttcgtttatgtaccagCCATCCTCCCTAGCAGCACTTCGAGAATGGGTATCCCACACTGATATTCAGAACTTTGAGATATTGCTGTGTATTGGAAACAAAGTGGACCTGGTTACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - -tatgtgc
- - - - - - - - - - - - - - - - - - tgagtga
- - - - - - - - - - - - - - - - - - - - - - - - - - tttatgc