1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagagacaattcttgcataggctttattactgtggtgtttggaattgaactcattaattactaaattaccagGTTGAGCCACATTTGTTTCCTATGCTTGCTAATTGGAAACGTGAGCATACAATGGAAGACGTTTTGATTCAATTGAAGAGAGAAATGATGTCTCCTCAAA
species | Glycine max |
transcript | GLYMA09G22600.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATTTCAAACAAGGATTAACATGACATGTGTCAATCAAGAAACTGGAGCG GTTGAGCCACATTTGTTTCCTATGCTTGCTAATTGGAAACGTGAGCATACAEST: gi|6071962|gb|AW101349.1|AW101349
genomic: GATTTCAAACAAGGATTAACATGACATGTGTCAATCAAGAAACTGGAGCGgtaagagaca ... aaattaccagGTTGAGCCACATTTGTTTCCTATGCTTGCTAATTGGAAACGTGAGCATACA
EST: GATTTCAAACAAGGATTAACATGACATGTGTCAATCAAGAAACTGGAGCG GTTGAGCCACATTTGTTTCCTATGCTTGCTAATTGGAAACGTGAGCATACAEST: gi|33387487|gb|CA850694.1|CA850694
genomic: GATTTCAAACAAGGATTAACATGACATGTGTCAATCAAGAAACTGGAGCGgtaagagaca ... aaattaccagGTTGAGCCACATTTGTTTCCTATGCTTGCTAATTGGAAACGTGAGCATACA
EST: GATTTCAAACAAGGATTAACATGACATGTGTCAATCAAGAAACTGGAGCG GTTGAGCCACATTTGTTTCCTATGCTTGCTAATTGGAAGCGTGAGCATACAEST: gi|298193121|gb|HO033555.1|HO033555
genomic: GATTTCAAACAAGGATTAACATGACATGTGTCAATCAAGAAACTGGAGCGgtaagagaca ... aaattaccagGTTGAGCCACATTTGTTTCCTATGCTTGCTAATTGGAAACGTGAGCATACA
EST: GATTTCAAACAAGGATTAACATGACATGTGTCAATCAAGAAACTGGAGCG GTTGAGCCACATTTGTTTCCTATGCTTGCTAATTGGAAACGTGAGCATACAEST: gi|21285722|gb|BQ473593.1|BQ473593
genomic: GATTTCAAACAAGGATTAACATGACATGTGTCAATCAAGAAACTGGAGCGgtaagagaca ... aaattaccagGTTGAGCCACATTTGTTTCCTATGCTTGCTAATTGGAAACGTGAGCATACA
EST: GATTTCAAACAAGGATTAACATGACATGTGTCAATCAAGAAACTGGAGCG GTTGAGCCACATTTGTTTCCTATGCTTGCTAATTGGAAACGTGAGCATACAEST: gi|9898614|gb|BE607582.1|BE607582
genomic: GATTTCAAACAAGGATTAACATGACATGTGTCAATCAAGAAACTGGAGCGgtaagagaca ... aaattaccagGTTGAGCCACATTTGTTTCCTATGCTTGCTAATTGGAAACGTGAGCATACA
EST: GATTCCAAACAAGGATTAACATGACATGTGTCAATCAAGAAACTGGAGCG GTTGAGCCACATTTGTTTCCTATGCTTGCTAATTGGAAACGTGAGCATACAEST: gi|22522487|gb|BU081298.1|BU081298
genomic: GATTTCAAACAAGGATTAACATGACATGTGTCAATCAAGAAACTGGAGCGgtaagagaca ... aaattaccagGTTGAGCCACATTTGTTTCCTATGCTTGCTAATTGGAAACGTGAGCATACA
EST: GATTTCAAACAAGGATTAACATGACATGTGTCAATCAAGAAACTGGAGCG GTTGAGCCACATTTGTTTCCTATGCTTGCTAATTGGAAACGTGAGCATACAEST: gi|207765796|gb|GD735115.1|GD735115
genomic: GATTTCAAACAAGGATTAACATGACATGTGTCAATCAAGAAACTGGAGCGgtaagagaca ... aaattaccagGTTGAGCCACATTTGTTTCCTATGCTTGCTAATTGGAAACGTGAGCATACA
EST: GATTTCAAACAAGGATTAACATGACATGTGTCAATCAAGAAACTGGAGCG GTTGAGCCACATTTGTTTCCTATGCTTGCTAATTGGAAACGTGAGCATAACEST: gi|19269626|gb|BM885882.1|BM885882
genomic: GATTTCAAACAAGGATTAACATGACATGTGTCAATCAAGAAACTGGAGCGgtaagagaca ... aaattaccagGTTGAGCCACATTTGTTTCCTATGCTTGCTAATTGGAAACGTGAGCATA-C
EST: GATTTCAAACAAGGATTAACATGACATGTGTCAATCAAGAAACTGGAGCG GTTGAGCCACATTTGTTTCCTATGCTTGCTAATTGGAAACGTGAGCATACA
genomic: GATTTCAAACAAGGATTAACATGACATGTGTCAATCAAGAAACTGGAGCGgtaagagaca ... aaattaccagGTTGAGCCACATTTGTTTCCTATGCTTGCTAATTGGAAACGTGAGCATACA
taggctttattactgtggtgtttggaattgaactcattaattactaaattaccagGTTGAGCCACATTTGTTTCCTATGCTTGCTAATTGGAAACGTGAGCATACAATGGAAGACGTTTTGATTCAATTGAAGAGAGAAATGATGTCTCCTCAAA
tactaaa putative branch site (score: 1)
aactcattaattacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagagacaattcttgcataggctttattactgtggtgtttggaattgaactcattaattactaaattaccagGTTGAGCCACATTTGTTTCCTATGCTTGCTAATTGGAAACGTGAGCATACAATGGAAGACGTTTTGATTCAATTGAAGAGAGAAATGATGTCTCCTCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC