1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...aactaaattaatcacatacaccatgggaaagagaaaattattaaagattttgcacataacatttttatatgatatagtttgtgatctttatccattacagGAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAAC
species | Glycine max |
transcript | GLYMA09G08150.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAG GAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAATEST: gi|208083788|gb|GD881736.1|GD881736
genomic: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAGgtatcgcaat ... tccattacagGAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
EST: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAG GAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAATEST: gi|254327078|gb|GR836687.1|GR836687
genomic: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAGgtatcgcaat ... tccattacagGAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
EST: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAG GAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAATEST: gi|208034630|gb|GD836794.1|GD836794
genomic: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAGgtatcgcaat ... tccattacagGAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
EST: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAG GAAATTATTGATGTGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAATEST: gi|193521194|gb|FK480305.1|FK480305
genomic: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAGgtatcgcaat ... tccattacagGAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
EST: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAG GAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAATEST: gi|208076069|gb|GD875124.1|GD875124
genomic: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAGgtatcgcaat ... tccattacagGAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
EST: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAG GAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAATEST: gi|254341577|gb|GR852714.1|GR852714
genomic: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAGgtatcgcaat ... tccattacagGAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
EST: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAG GAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAATEST: gi|151408630|gb|EV278438.1|EV278438
genomic: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAGgtatcgcaat ... tccattacagGAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
EST: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAG GAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAATEST: gi|6668020|gb|AW279471.1|AW279471
genomic: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAGgtatcgcaat ... tccattacagGAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
EST: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAG GAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAATEST: gi|16347961|gb|BI973556.1|BI973556
genomic: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAGgtatcgcaat ... tccattacagGAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
EST: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAA GAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAATEST: gi|254331835|gb|GR846145.1|GR846145
genomic: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAGgtatcgcaat ... tccattacagGAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
EST: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAG GAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAATEST: gi|27427065|gb|CA938585.1|CA938585
genomic: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAGgtatcgcaat ... tccattacagGAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
EST: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAG GAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
genomic: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAGgtatcgcaat ... tccattacagGAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
gattttgcacataacatttttatatgatatagtttgtgatctttatccattacagGAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAAC
acataac putative branch site (score: 3)
tctttatcc putative PPT
acataacatttttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactaaattaatcacatacaccatgggaaagagaaaattattaaagattttgcacataacatttttatatgatatagtttgtgatctttatccattacagGAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAAC
- - - - - - - catacac
- - - - - - - - - - - - - - aagagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - tgcacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtttgtg