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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttttaatgaaaaagtcttagttagcatattgtgtttttgttgtacagcttggattttgatcctcaattccttcattgtacagACATATTCTCCTATACCTCCACACGGGTTCTTGGCATCAAGTCCCCAAGCCCACCCATATATGTGGGGCGTCCAG

Basic information

species Glycine max
transcript GLYMA08G34280.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G34280.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv02s0012g02250.t01 (Vitis vinifera), 3'ss of exon 3
-----------------------gtttttaatgaaaaagtctta-----gttagcatattgtgtttttgttgtacagcttggat--tttgatcctcaattccttcattgtacagACATATTCTCCTATACCTCCACACGGGTTCTTGGCATCAAGTCCCCAAGCCCACCCATATATGTGGGGCGTCCAG
                       | || || | |     |   |     | |  | |||||| ||||  ||||  |  | |  |   || ||  |   |   || ||  ||||| |||||||||| ||||||||||| ||||||||||| |||||||||||||| ||||| || |||||||| || |||
gttcctttagtcaaaacttaaaagcttatactaagggttttccattgttgctttcttattgtcttttaattgtttatgtggcttgacttaattttttttatttttat--tacagGCATATTCTCCCATACCTCCACATGGGTTCTTGGCGTCAAGTCCCCAAGCTCACCCTTACATGTGGGGAGTTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgtgtttttgttgtacagcttggattttgatcctcaattccttcattgtacagACATATTCTCCTATACCTCCACACGGGTTCTTGGCATCAAGTCCCCAAGCCCACCCATATATGTGGGGCGTCCAG
                          ttttgat  putative branch site (score: 4)
                                tcctcaattccttc  CT-rich tract
      tttttgtt  TA-rich tract