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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatattgcttgctcatttttggaagatttcttttttttccagtttctttatccatattagctattgtgaatgtgtgtgtcagCCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCTTCTGATCCTCCAGTGCAAACTCA

Basic information

species Glycine max
transcript GLYMA08G23930.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4307032|gb|AI443989.1|AI443989
EST:     AGTAAAAACAT-AGGTTCTGCTGCAGCTTCATCTGTTCAG                         CCCTGC-AGTAATCCTCCTACGACTG
genomic: AGTAAAA-CATCAGGTTCTGCTGCAGCTTCATCTGTTCAGgtatatattg ... tgtgtgtcagCC-TGCCAGTAATCCTCCTACGACTG
EST: gi|298198982|gb|HO042345.1|HO042345
EST:     AGTAAAACATCAGGTTCTGCCGCAGCTTCATCTGTTCAG                         CCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCT
genomic: AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAGgtatatattg ... tgtgtgtcagCCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCT
EST: gi|192332023|gb|FK024539.1|FK024539
EST:     AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAG                         CCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCT
genomic: AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAGgtatatattg ... tgtgtgtcagCCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCT
EST: gi|16348403|gb|BI973998.1|BI973998
EST:     AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAG                         CCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCT
genomic: AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAGgtatatattg ... tgtgtgtcagCCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCT
EST: gi|298178394|gb|HO024129.1|HO024129
EST:     AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAG                         CCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCT
genomic: AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAGgtatatattg ... tgtgtgtcagCCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCT
EST: gi|16105282|gb|BI893022.1|BI893022
EST:     AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAG                         CCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCT
genomic: AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAGgtatatattg ... tgtgtgtcagCCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCT
EST: gi|151410032|gb|EV279840.1|EV279840
EST:     AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAG                         CCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCT
genomic: AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAGgtatatattg ... tgtgtgtcagCCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCT
EST: gi|298171945|gb|HO021537.1|HO021537
EST:     AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAG                         CCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCT
genomic: AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAGgtatatattg ... tgtgtgtcagCCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCT
EST: gi|27446142|gb|CA953265.1|CA953265
EST:     AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAG                         CCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCT
genomic: AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAGgtatatattg ... tgtgtgtcagCCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCT
EST: gi|298196834|gb|HO041577.1|HO041577
EST:     AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAG                         CCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCTCTCCT
genomic: AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAGgtatatattg ... tgtgtgtcagCCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCT
EST: gi|298179084|gb|HO027555.1|HO027555
EST:     AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAG                         CCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCT
genomic: AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAGgtatatattg ... tgtgtgtcagCCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCT
EST: gi|120495849|gb|EH224016.1|EH224016
EST:     AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAG                         CCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCT
genomic: AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAGgtatatattg ... tgtgtgtcagCCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttttttttccagtttctttatccatattagctattgtgaatgtgtgtgtcagCCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCTTCTGATCCTCCAGTGCAAACTCA
               tttctttat  TA-rich tract