1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaggtcgaaccataatctaattatactagctagcaatagcaccttactgatcagtttgaaactcatagaatatatgttcccttatgaaattaaatttagGGAGTTCAAAGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGCCAACACAGAGAGGTACAGCAACGTAGTTGTGGGACTAAACGACACCATG
species | Glycine max |
transcript | GLYMA08G14670.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCAGGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAA GGAGTTCAAAGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGCEST: gi|5678158|gb|AI939288.1|AI939288
genomic: ATCAGGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtcgaa ... ttaaatttagGGAGTTCAAAGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGC
EST: AGAACAAGTTCAACAAATCATCAAAGACATTAA GGAGTTCAAAGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGCEST: gi|9901531|gb|BE610499.1|BE610499
genomic: AGAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtcgaa ... ttaaatttagGGAGTTCAAAGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGC
EST: ATCATGGGCACAAAGAAAGAACAAGTTCAACAAATCATCACAGACATTAA GGAGTTCAAAGAAAGCACTAATGTTGACAAGGTGGTTGTCCTGTGGACAGCEST: gi|22524419|gb|BU083230.1|BU083230
genomic: ATCAGGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtcgaa ... ttaaatttagGGAGTTCAAAGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGC
EST: ATCAGGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAA GGAGTTCAAAGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGCEST: gi|208276855|gb|GE073400.1|GE073400
genomic: ATCAGGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtcgaa ... ttaaatttagGGAGTTCAAAGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGC
EST: ATCAGGGGCACAAAGAAAGA-CAAGTTCAACAAATCATCAAAGACATTAA GGAGTTCAAAGAAAGCACTAAGGTTGACAAGGTGGTTGTEST: gi|31561688|gb|CD487526.1|CD487526
genomic: ATCAGGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtcgaa ... ttaaatttagGGAGTTCAAAGAAAGCACTAAGGTTGACAAGGTGGTTGT
EST: ATCAGGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAA GGAGTTCAAAGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGCEST: gi|120492592|gb|EH220759.1|EH220759
genomic: ATCAGGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtcgaa ... ttaaatttagGGAGTTCAAAGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGC
EST: ATCAGGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAA GGAGTTCAAAGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGCEST: gi|22523311|gb|BU082122.1|BU082122
genomic: ATCAGGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtcgaa ... ttaaatttagGGAGTTCAAAGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGC
EST: ATCAGGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAA GGAGTTCAAAGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGCEST: gi|15284727|gb|BI468618.1|BI468618
genomic: ATCAGGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtcgaa ... ttaaatttagGGAGTTCAAAGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGC
EST: ATCAGGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAA GGAGTTCAAAGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGCEST: gi|120492384|gb|EH220551.1|EH220551
genomic: ATCAGGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtcgaa ... ttaaatttagGGAGTTCAAAGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGC
EST: ATCAGGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAA GGAGTTCAAAGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGCEST: gi|15203059|gb|BI425827.1|BI425827
genomic: ATCAGGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtcgaa ... ttaaatttagGGAGTTCAAAGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGC
EST: ATCAGGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAA GGAGTTCAAAGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGC
genomic: ATCAGGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtcgaa ... ttaaatttagGGAGTTCAAAGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGC
tactgatcagtttgaaactcatagaatatatgttcccttatgaaattaaatttagGGAGTTCAAAGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGCCAACACAGAGAGGTACAGCAACGTAGTTGTGGGACTAAACGACACCATG
tactgat putative branch site (score: 2)
ttatgaaattaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtcgaaccataatctaattatactagctagcaatagcaccttactgatcagtttgaaactcatagaatatatgttcccttatgaaattaaatttagGGAGTTCAAAGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGCCAACACAGAGAGGTACAGCAACGTAGTTGTGGGACTAAACGACACCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG