1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ataatttctaacatgctgaaaacataaaattcttaaattaactatacttagtttctgaaccatgccataattaaacacgagtcttaattaatttatgcagGTGAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACCTGGCTGATGCCATGGCCAGGGCCAAGGTGTTTGATATCGACCTGCAGA
species | Glycine max |
transcript | GLYMA08G14670.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTTCCAAGGGGAAGAAATATATGCTCCATTCAAGAGCCTGCTTCCAATG GTGAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACEST: gi|31561688|gb|CD487526.1|CD487526
genomic: CTTTCCAAGGGGAAGAAATATATGCTCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTGAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: CTTTCCAAGGGGAAGAAATATATGCTCCATTCAAGAGCCTGCTTCCAATG GTGAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACEST: gi|14011639|gb|BG726561.1|BG726561
genomic: CTTTCCAAGGGGAAGAAATATATGCTCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTGAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: GGGAAGAAATATATGCTCCATTCAAGAGCCTGCTT-CATATG GTGAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAEST: gi|21638055|gb|BM108210.1|BM108210
genomic: GGGAAGAAATATATGCTCCATTCAAGAGCCTGCTTCCA-ATGgtatactacc ... atttatgcagGTGAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAA
EST: CTTTCCAAGGGGAANAAATATATGCTCCATTCAAGAGCCTGCTTCCAATG GTGAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACEST: gi|9901531|gb|BE610499.1|BE610499
genomic: CTTTCCAAGGGGAAGAAATATATGCTCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTGAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: CTTTCCAAGGGGAAGAAATATATGCTCCATTCAAGAGCCTGCTTCCAATG GTGAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACEST: gi|15284727|gb|BI468618.1|BI468618
genomic: CTTTCCAAGGGGAAGAAATATATGCTCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTGAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: CTTTCCAAGGGGAAG-AATATATGCTCCATTCAAGAGCCTGCTTCCAATG GTGAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
genomic: CTTTCCAAGGGGAAGAAATATATGCTCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTGAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
acttagtttctgaaccatgccataattaaacacgagtcttaattaatttatgcagGTGAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACCTGGCTGATGCCATGGCCAGGGCCAAGGTGTTTGATATCGACCTGCAGA
aattaat putative branch site (score: 3)
agtcttaattaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataatttctaacatgctgaaaacataaaattcttaaattaactatacttagtttctgaaccatgccataattaaacacgagtcttaattaatttatgcagGTGAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACCTGGCTGATGCCATGGCCAGGGCCAAGGTGTTTGATATCGACCTGCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG