1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gattcaactgttatcggtatattgcatctatacttttatccagtggtcgagcttcatttttcaattggaacttgacatctttttaacatctttattacagGGATATGTGAAGCAAAAGTTATCGTCGGGGGGCAAATATGTATCTGTAAATATTGGGCCCATTCAAGTTGTTTCTAGTGAACAG
species | Glycine max |
transcript | GLYMA08G10990.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGCCATGGTTGTTGCTGTCGAATCTGTAATCCAACAACCAATTCCTCAG GGATATGTGAAGCAAAAGTTATCGTCGGNGGGCAAATATGTATCTGTAAATEST: gi|5606926|gb|AI901024.1|AI901024
genomic: AAGCCATGGTTGTTGCTGTCGAATCTGTAATCCAACAACCAATTCCTCAGgtatatctat ... tttattacagGGATATGTGAAGCAAAAGTTATCGTCGGGGGGCAAATATGTATCTGTAAAT
EST: GTCGAATCTGTAATCCAACAACCAATTCCTCAG GGATATGTGAAGCAAAAGTTATCGTCGGGGGGCAAATATGTATCTGTAAATEST: gi|7796482|gb|AW781879.1|AW781879
genomic: GTCGAATCTGTAATCCAACAACCAATTCCTCAGgtatatctat ... tttattacagGGATATGTGAAGCAAAAGTTATCGTCGGGGGGCAAATATGTATCTGTAAAT
EST: AAGCCATGGTTGTTGCTGTCGAATCTGTAATCCAACAACCAATTCCTCAG GGATATGTGAAGCAAAAGTTATCGTCGGGGGGCAAATATGTATCTGTAAATEST: gi|20811540|gb|BQ296018.1|BQ296018
genomic: AAGCCATGGTTGTTGCTGTCGAATCTGTAATCCAACAACCAATTCCTCAGgtatatctat ... tttattacagGGATATGTGAAGCAAAAGTTATCGTCGGGGGGCAAATATGTATCTGTAAAT
EST: AAGCCATGGTTGTTGCTGTCGAATCTGTAATCCAACAACCAATTCCTCAG GGATATGTGAAGCAAAAGTTATCGTCGGGGGGCAAATATGTATCTGTAAATEST: gi|298197438|gb|HO044917.1|HO044917
genomic: AAGCCATGGTTGTTGCTGTCGAATCTGTAATCCAACAACCAATTCCTCAGgtatatctat ... tttattacagGGATATGTGAAGCAAAAGTTATCGTCGGGGGGCAAATATGTATCTGTAAAT
EST: AAGCCATGGTTGTTGCTGTCGAATCTGTAATCCAACAACCAATTCCTCAG GGATATGTGAAGCAAAAGTTATCGTCGGGGGGCAAATATGTATCTGTAAATEST: gi|22541149|gb|BU090992.1|BU090992
genomic: AAGCCATGGTTGTTGCTGTCGAATCTGTAATCCAACAACCAATTCCTCAGgtatatctat ... tttattacagGGATATGTGAAGCAAAAGTTATCGTCGGGGGGCAAATATGTATCTGTAAAT
EST: AAGCCATGGTTGTTGCTGTCGAATCTGTAATCCAACAACCAATTCCTCAG GGATATGTGAAGCAAAAGTTATCGTCGGGGGGCAAATATGTATCTGTAAATEST: gi|21888824|gb|BQ742037.1|BQ742037
genomic: AAGCCATGGTTGTTGCTGTCGAATCTGTAATCCAACAACCAATTCCTCAGgtatatctat ... tttattacagGGATATGTGAAGCAAAAGTTATCGTCGGGGGGCAAATATGTATCTGTAAAT
EST: AAGCCATGGTTGTTGCTGTCGAATCTGTAATCCAACAACCAATTCCTCAG GGATATGTGAAGCAAAAGTTATCGTCGGGGGGCAAATATGTATCTGTAAATEST: gi|6481967|gb|AW201238.1|AW201238
genomic: AAGCCATGGTTGTTGCTGTCGAATCTGTAATCCAACAACCAATTCCTCAGgtatatctat ... tttattacagGGATATGTGAAGCAAAAGTTATCGTCGGGGGGCAAATATGTATCTGTAAAT
EST: AAGCCATGGTTGTTGCTGTCGAATCTGTAATCCAACAACCAATTCCTCAG GGATATGTGAAGCAAAAGTTATCGTCGGCGGGCAAATATGTATCTGTAAAT
genomic: AAGCCATGGTTGTTGCTGTCGAATCTGTAATCCAACAACCAATTCCTCAGgtatatctat ... tttattacagGGATATGTGAAGCAAAAGTTATCGTCGGGGGGCAAATATGTATCTGTAAAT
gtcgagcttcatttttcaattggaacttgacatctttttaacatctttattacagGGATATGTGAAGCAAAAGTTATCGTCGGGGGGCAAATATGTATCTGTAAATATTGGGCCCATTCAAGTTGTTTCTAGTGAACAG
ttttaac putative branch site (score: 2)
tctttatt CT-rich tract
atctttttaacatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gattcaactgttatcggtatattgcatctatacttttatccagtggtcgagcttcatttttcaattggaacttgacatctttttaacatctttattacagGGATATGTGAAGCAAAAGTTATCGTCGGGGGGCAAATATGTATCTGTAAATATTGGGCCCATTCAAGTTGTTTCTAGTGAACAG
- - caactgt
- - - - - - - - - - - tgcatct
- - - - - - - - - - - - - - - - - - - tccagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgaca