Sequence
atgc intronic sequence ATGC exonic sequence...ctttctttctgtttcatttggcataaatttacaatcacagttctatatttgagagcaaatactctggtttaagggatcttatctttattttcatttatagGTTCTCTTGTAAGGCCGAAGGTTGTTAAAAGTGTTCATTTTTGCCCCACCACGGGAAGCTTCACTTCTCGCGAATATCGTGATATTACATCTAATTTGGG
Basic information
species | Glycine max |
transcript | GLYMA08G08920.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G08920.1 (Glycine max), 3'ss of exon 3
lower sequence: AT5G46280.1 (Arabidopsis thaliana), 3'ss of exon 3
-------ctttctttctgtttcatttggcataaatttacaatcacagttctatatttgagagcaaatactctggtttaagggatcttatctttattttcatttatagGTTCTCTTGTAAGGCCGAAGGTTGTTAAAAGTGTTCATTTTTGCCCCACCACGGGAAGCTTCACTTCTCGCGAATATCGTGATATTACATCTAATTTGGG
| | ||| | ||| | | ||| | | | | ||| | || | | || ||| | | ||| || ||| |||||||| ||||| |||||||||||||| ||||| ||||| || | || || || || ||| || ||||| || || |||||| | ||
gtaagctcatcattttcactctattcctc-tgcttttcttctgtttcctttgtgttttacgtagaagattttgaacc------tctgacacatgcttt-gctttcagGCTCTCTTGTGAGGCCAAAGGTTGTTAAAAGCGTTCACTTTTGTCCATCAACCGGTGAATTTACCAATCGAGATTATCGAGACATAACATCTCACGCTGG
upper sequence: GLYMA08G08920.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv10s0003g03080.t01 (Vitis vinifera), 3'ss of exon 3
ctttctttctgtttcatttggcataaatttacaatcacagttctatatttgagagcaaat--actctggttta-agggatcttatct------ttattttcatttatagGTTCTCTTGTAAGGCCGAAGGTTGTTAAAAGTGTTCATTTTTGCCCCACCACGGGAAGCTTCACTTCTCGCGAATATCGTGATATTACATCTAATTTGGG
| || || || | |||| || | | || || |||| | | || || ||| | || |||| | || || | |||| | ||||||||||||||||||| |||||||||||||||||||| || ||||| | | || | |||||| | || |||||||| |||||||| || ||| ||||
-------tttgcttagttataaactaatt--catttccttgtcaattcttgatggtatattgacgttggagcatagatatctaacctgctcatttttcctcatctctagGTTCTCTTGTAAGGCCAAAGGTTGTTAAAAGTGTTCACTTCTGCCCTTCATCTGGGAATTTCACTACCCGTGAATATCGAGATATTACGTCCAATATGGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatttgagagcaaatactctggtttaagggatcttatctttattttcatttatagGTTCTCTTGTAAGGCCGAAGGTTGTTAAAAGTGTTCATTTTTGCCCCACCACGGGAAGCTTCACTTCTCGCGAATATCGTGATATTACATCTAATTTGGG
tcttatctttattttc CT-rich tract
atcttatctttatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctttctttctgtttcatttggcataaatttacaatcacagttctatatttgagagcaaatactctggtttaagggatcttatctttattttcatttatagGTTCTCTTGTAAGGCCGAAGGTTGTTAAAAGTGTTCATTTTTGCCCCACCACGGGAAGCTTCACTTCTCGCGAATATCGTGATATTACATCTAATTTGGG
- - ctttctg
- - - - - - - - - - - - - - - -caatcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctggtt