1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctttggagtgaaggttgattgccattcaccaatgaaaaatgtagaatcaacacaaatacaatatattggtttaccattcctttttaatttttccccgcagAATTGGTAGAAGATGTGAATCTCTTGATCAGAAGGGCTGAGAGATGTCTGGAAGCAGGTGCAGACATGATAATGATTGATGCTGATGATGTCAGCAAACA
species | Glycine max |
transcript | GLYMA08G06660.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGTGACAGGGCGTATGGGGCTTATATTCCCCCTGTACCTAGATCATTTG AATTGGTAGAAGATGTGAATCTCTTGATCAGAAGGGCTGAGAGATGTCTGGEST: gi|151394464|gb|EV264335.1|EV264335
genomic: TGGTGACAGGGCTTATGGGGCTTATATTCCCCCTGTACCTAGATCATTTGgtaaggatat ... ttccccgcagAATTGGTAGAAGATGTGAATCTCTTGATCAGAAGGGCTGAGAGATGTCTGG
EST: TGGTGACAGGGCTTATGGGGCTTATATTCCCCCTGTACCTAGATCATTTG AATTGGTAGAAGATGTGAATCTCTTGATCAGAAGGGCTGAGAGATGTCTGGEST: gi|151401140|gb|EV270954.1|EV270954
genomic: TGGTGACAGGGCTTATGGGGCTTATATTCCCCCTGTACCTAGATCATTTGgtaaggatat ... ttccccgcagAATTGGTAGAAGATGTGAATCTCTTGATCAGAAGGGCTGAGAGATGTCTGG
EST: TGGTGACAGGGCTTATGGGGCTTATATTCCCCCTGTACCTAGATCATTTG AATTGGTAGAAGATGTGAATCTCTTGATCAGAAGG-CTGAGAGATGTCTGGEST: gi|51336189|gb|CO980055.1|CO980055
genomic: TGGTGACAGGGCTTATGGGGCTTATATTCCCCCTGTACCTAGATCATTTGgtaaggatat ... ttccccgcagAATTGGTAGAAGATGTGAATCTCTTGATCAGAAGGGCTGAGAGATGTCTGG
EST: TGGTGACAGGGCTTATGGGGCTTATATTCCCCCTGTACCTAGATCATTTG AATTGGTAGAAGATGTGAATCTCTTGATCAGAAGGGCTGAGAGATGTCTGGEST: gi|9258852|gb|BE346999.1|BE346999
genomic: TGGTGACAGGGCTTATGGGGCTTATATTCCCCCTGTACCTAGATCATTTGgtaaggatat ... ttccccgcagAATTGGTAGAAGATGTGAATCTCTTGATCAGAAGGGCTGAGAGATGTCTGG
EST: TGGTGACAGGGCTTATGGGGCTTATATTCCCCCTGTACCTAGATCATATG GATTTGTACGAAGATGTGAATCTCTTGATCEST: gi|151394843|gb|EV264714.1|EV264714
genomic: TGGTGACAGGGCTTATGGGGCTTATATTCCCCCTGTACCTAGATCATTTGgtaaggatat ... ttccccgcagAATTGGTA-GAAGATGTGAATCTCTTGATC
EST: TGGTGACAGGGCTTATGGGGCTTATATTCCCCCTGTACCTAGATCATTTG AATTGGTAGAAGATGTGAATCTCTTGATCAGAAGGGCTGAGAGATGTCTGG
genomic: TGGTGACAGGGCTTATGGGGCTTATATTCCCCCTGTACCTAGATCATTTGgtaaggatat ... ttccccgcagAATTGGTAGAAGATGTGAATCTCTTGATCAGAAGGGCTGAGAGATGTCTGG
atcaacacaaatacaatatattggtttaccattcctttttaatttttccccgcagAATTGGTAGAAGATGTGAATCTCTTGATCAGAAGGGCTGAGAGATGTCTGGAAGCAGGTGCAGACATGATAATGATTGATGCTGATGATGTCAGCAAACA
ttttaat putative branch site (score: 3)
tttaccattccttttt CT-rich tract
attcctttttaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttggagtgaaggttgattgccattcaccaatgaaaaatgtagaatcaacacaaatacaatatattggtttaccattcctttttaatttttccccgcagAATTGGTAGAAGATGTGAATCTCTTGATCAGAAGGGCTGAGAGATGTCTGGAAGCAGGTGCAGACATGATAATGATTGATGCTGATGATGTCAGCAAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - -gtgaagg
- - - - - - - -tgattgc
- - - - - - - - - - - - -tcaccaa
- - - - - - - - - - - - - - - - - - -aatgtag
- - - - - - - - - - - - - - - - - - - - - - - -caacaca